SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G79750 | AT | Annotation by Michelle Graham. TAIR10: NADP-malic enzyme 4 | chr1:30007655-30011179 REVERSE LENGTH=646 | SoyBase | E_val: 0 | ISS |
| GO:0006094 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gluconeogenesis | SoyBase | N/A | ISS |
| GO:0006108 | GO-bp | Annotation by Michelle Graham. GO Biological Process: malate metabolic process | SoyBase | N/A | ISS |
| GO:0006633 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0007010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0010498 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process | SoyBase | N/A | ISS |
| GO:0051289 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein homotetramerization | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0004470 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: malic enzyme activity | SoyBase | N/A | ISS |
| GO:0004473 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016616 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | SoyBase | N/A | ISS |
| GO:0016652 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor | SoyBase | N/A | ISS |
| GO:0042803 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| GO:0050897 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cobalt ion binding | SoyBase | N/A | ISS |
| GO:0051287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NAD binding | SoyBase | N/A | ISS |
| KOG1257 | KOG | NADP+-dependent malic enzyme | JGI | ISS | |
| PTHR23406 | Panther | MALIC ENZYME-RELATED | JGI | ISS | |
| PTHR23406:SF2 | Panther | MALIC ENZYME | JGI | ISS | |
| PF00390 | PFAM | Malic enzyme, N-terminal domain | JGI | ISS | |
| PF03949 | PFAM | Malic enzyme, NAD binding domain | JGI | ISS | |
| UniRef100_I1KV22 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Malic enzyme n=2 Tax=Glycine max RepID=I1KV22_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KV22 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Malic enzyme n=2 Tax=Glycine max RepID=I1KV22_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g21530 not represented in the dataset |
Glyma08g21530 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g01851 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g201200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g21530.1 sequence type=CDS gene model=Glyma08g21530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCTCCTCCAATGCATACTCCTTCATGTGCAAGCCGGGCATAGGTGGGTGGTCTTCGTGCAGCAACTTGTCTGCTTCACAGAGGAAGCTTTTGGGTTCTTCTTCGAGAATCACGTGTTGTGCTCCAACCAATAGCAAAAGCCACGGCGGCGTTGTCATGGAGAATGAGACAAATGGCTCTTCCACGGTGGACGACTTCGACGTCAACCCCATCCCCAGCGGCGGCGTTCGGGATGTGTACGGCGAGGACAAGGCCACTGAGGATCAGTTTGTGACTCCCTGGAGTATCTCTGTTGCTAGTGGATATTCTTTGTTGAGAGATCCACACTACAACAAAGGACTGGCCTTCACTGAAAAAGAGAGGGATGCTCACTATTTGCGTGGCCTTCTTCCCCCATCAGTTATTTCTCAGGAAACTCAGGTGACGAAAATGATCCGACATATACGCCAGTATGAAGTTCCATTGCACAAGTACATAGCAATGATGGATCTTCAGGAGAGGAATGAAAGGCTGTTTTACAAGCTTCTACTTGATCATGTTGAGGAGTTACTCCCAGTTGTGTATACTCCAACTGTTGGTGAAGCTTGTCAGAAATATGGGAGCATCTTCATGCATCCTCAGGGTCTTTATATAAGTTTGAAGGAGAAAGGGAGGATTCTTGAAGTACTAAGGAATTGGCCTGAGAAGAACATTCAAGTCATTGTTGTAACTGATGGAGAGCGAATTCTGGGTCTTGGGGATCTAGGTTGTCAGGGGATGGGAATACCAGTAGGAAAACTTTCTTTATATTCAGCACTTGGTGGAGTTCGTCCTTCTGCTTGCTTGCCTATTACCATCGATGTGGGTACAAACAATCAGAAGTTGTTGCATGATGAATTATATTTTGGGCTCAGGCATAAACGAGCAACTGGGCAGGAATACACTGAACTTCTGCATGAATTTATGAATGCAGTCAAGCAAAATTATGGTGAAAGAATCCTCGTTCAGTTCGAAGACTTTGCAAACCACAATGCTTTTGATCTACTTGAAAAATATAGATCAACACATCTTGTCTTTAATGATGATATTCAGGGAACAGCATCAGTGGTCCTTGCAGGAGTAGTTTCTGCTCTAAAATTGGTTGGGGGAGACTTGACTGATCACAGGTTCTTATTCCTTGGTGCTGGAGAGGCTGGCACGGGAATAGCAGAACTCATAGCACTTGAAACATCAAAACGGACAAATGTCCCCCTAGATGAAGTGCGCAAGAACATTTGGTTGGTGGACTCAAAGGGTTTGATTGTGAGTTCCCGTAAAGAATCACTTCAACATTTTAAGAAGCCATGGGCTCATGAACATGAACCTGTTAAGGAACTTGTAGATGCTGTTAAGGAAATTAAGCCAACGGTGTTAATTGGAACATCAGGACAAGGGAGAACTTTTACTAAAGATGTTATTGAAGCTATGGCTTCCATTAATGAGAAACCAATTATTCTTTCTCTTTCCAACCCAACATCACAGTCGGAATGCACTGCTGAAGAAGCTTATACTTGGAGCCAGGGACGTGCCATTTTTGCTAGTGGGAGCCCATTTGCCCCCGTTGAATATGATGGAAAAGTGTTTGTGCCTGGCCAGGCTAATAATGCATACATTTTTCCTGGATTTGGTCTTGGTTTAATAATGTCTGGGACCATTCGAGTGCACGATGACCTGCTTCTGGCAGCTTCTGAGGCTTTGGCTTCACAGGTGACCCAGAAGGACTATGACAAGGGACTCATATACCCACCATTCAGCAACATCAGAAAGATTTCAGCACGCATTGCTGCCAATGTTGCTGCTAAGGCCTATGAGCTTGGCTTGGCCACTAGCCTTCCTCAACCAAAAGATTTGGTGAAGTTTGCTGAGAGCTCTATGTATACACCACTCTATAGAGGCTACCGGTGA
>Glyma08g21530.1 sequence type=predicted peptide gene model=Glyma08g21530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFSSNAYSFMCKPGIGGWSSCSNLSASQRKLLGSSSRITCCAPTNSKSHGGVVMENETNGSSTVDDFDVNPIPSGGVRDVYGEDKATEDQFVTPWSISVASGYSLLRDPHYNKGLAFTEKERDAHYLRGLLPPSVISQETQVTKMIRHIRQYEVPLHKYIAMMDLQERNERLFYKLLLDHVEELLPVVYTPTVGEACQKYGSIFMHPQGLYISLKEKGRILEVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYSALGGVRPSACLPITIDVGTNNQKLLHDELYFGLRHKRATGQEYTELLHEFMNAVKQNYGERILVQFEDFANHNAFDLLEKYRSTHLVFNDDIQGTASVVLAGVVSALKLVGGDLTDHRFLFLGAGEAGTGIAELIALETSKRTNVPLDEVRKNIWLVDSKGLIVSSRKESLQHFKKPWAHEHEPVKELVDAVKEIKPTVLIGTSGQGRTFTKDVIEAMASINEKPIILSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFAPVEYDGKVFVPGQANNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALASQVTQKDYDKGLIYPPFSNIRKISARIAANVAAKAYELGLATSLPQPKDLVKFAESSMYTPLYRGYR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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