Report for Sequence Feature Glyma08g21490
Feature Type: gene_model
Chromosome: Gm08
Start: 16324542
stop: 16329033
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g21490
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G79730 AT
Annotation by Michelle Graham. TAIR10: hydroxyproline-rich glycoprotein family protein | chr1:30000743-30003969 REVERSE LENGTH=589
SoyBase E_val: 0 ISS
GO:0000085 GO-bp
Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle
SoyBase N/A ISS
GO:0009640 GO-bp
Annotation by Michelle Graham. GO Biological Process: photomorphogenesis
SoyBase N/A ISS
GO:0009910 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of flower development
SoyBase N/A ISS
GO:0016567 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein ubiquitination
SoyBase N/A ISS
GO:0016571 GO-bp
Annotation by Michelle Graham. GO Biological Process: histone methylation
SoyBase N/A ISS
GO:0016579 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein deubiquitination
SoyBase N/A ISS
GO:0045893 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG2478
KOG
Putative RNA polymerase II regulator
JGI ISS
PTHR23188 Panther
FAMILY NOT NAMED
JGI ISS
PTHR23188:SF3 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF03985 PFAM
Paf1
JGI ISS
UniRef100_B9GXE7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: PAF1 complex component n=1 Tax=Populus trichocarpa RepID=B9GXE7_POPTR
SoyBase E_val: 0 ISS
UniRef100_UPI0002338C8F UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002338C8F related cluster n=1 Tax=unknown RepID=UPI0002338C8F
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g21490
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g21490
Paralog Evidence Comments
Glyma07g01830 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g21490 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g201000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g21490
Coding sequences of Glyma08g21490
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g21490.1 sequence type=CDS gene model=Glyma08g21490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCTCTTACAGGCCCTTCCCTCCCCAATCGAGTCAAATTCCAAACCCGATCCCAGGTGGGAATCATCAGTATAATAATAATAATAATCAAAATCAAAATTGGGGTGCTTATGGAGATCCCTCTACTTCTTCATTCCCCCAAATCCCTCCAAATTCCAATTATCATCAAAATCAACATCATGTTCCATATGCACCAGCACCTTCAAATCCCCACCACCCTCCTCACTATCCATATCCACCACCACCGCCGCCGCCGCCGCCACCGGAGGCTTCATACCAGCCGCCGCCGCCACCACCACCACCAGCTCCTATGTATTATCCCTCTAGTAGTCAGTATAGCAACCAGCCACCTCCACCGCCACCGCCCTTGTCGCCACCACCACCACCTCCCCCGGTTTCGCCTCCTCCTCCTCCCCCGGCAACTCAGAACAACAACGAGGAGCGGCGTTTCAAGGAGCCTTCCAAGTCTGGCCGGCGCGAATACGAGCATTCCAATCACGGCATTGCTCACAAACAGCACAAGCAGCAGCAGCCTCCCCTTCCGGTGAAGAAGATGAACAACGGGCCTCCCGGCAGGGCTGAGACCGATGAAGAGAAGAGGTTGAGGAAGAAAAGGGAATTTGAGAAGCAGAGGCAGGAGGAAAAGCATAGGCAGCAGCTGAAGGAGTCCCAGAATACTGTTCTGCAGAAGACTCACCTGTTGTCATCTGGGAAGGGGCATGGCATGATTGCAGGGTCTCGAATGGGTGAAAGGAGATCTACTCCCTTGTTGGGTGCTGAGAGGGTTGAAAATAGGTTGAAGAAGCCCACAACGTTTTTGTGTAAGCTCAAATTTCGAAATGAACTTCCAGATCCAAGTGCTCAACCTAAGCTTATGTCCTTCAAGAAAGATAAAGATCAATATGCAAAATATACAATCACGTCTCTGGAGAAAATGTACAAACCCAAGCTTTTTGTGGAGCCAGATCTAGGGATACCTCTGGACCTGCTTGATCTCAGTGTTTATAATCCTCCCAGGGTCAGACCACCCCTTGCTCCAGAAGATGAAGAATTGTTGCGAGATGATGAAGCTGCTACTCCTATTAAAAAAGATGGCATTAAAAGAAAGGAGAGGCCTACTGATAAAGGTGTAGCATGGCTTGTAAAAACACAATATATTTCTCCTCTAAGCATGGAGTCGACAAAGCAGTCTTTAACTGAGAAACAAGCTAAGGAGCTGAGAGAGATGAAGGGTCGTGGCATTTTGGACAATCTCAACAGTAGGGAAAGACAAATTAGGGAAATCCAAGCATCATTTGAAGCAGCTAAGTCTGATCCTGTTCATGCAACCAACAAAGATTTGTATCCTGTTGAGGTTATGCCATTGCTGCCTGATTTTGATAGGTATGATGATCAGTTTGTTGTTGCTGCATTTGATAATGCTCCCACAGCTGATTCAGAAATGTATGCTAAGATGAACAAATCTGTTCGTGATGCCTTTGAATCAAAGGCAGTTATGAAAAGTTATGTTGCAACGGGTTTGGATCCTGCTAACCCTGAGAAGTTTTTGGCTTATATGGCCCCAGCACCAGGAGAGCTGTCAAAGGATATATATGATGAAAATGAAGATGTCTCGTACTCTTGGATTCGCGAGTATCATTGGGATGTTCGGGGTGATGATGCAGATGATCCCACAACATTCTTAGTTGCATTCGATGAGTCAGAAGCACGCTACTTGCCTCTTCCAACTAAACTTGTTTTAAGAAAAAAGAGGGCAAAAGAGGGAAGATCGGGTGATGAAGTTGAGCAATGTCCAGTACCTGCAAGAGTGACTGTAAGGCGAAGGTCTAGTGTTGCTGCGATTGAGCGGAAGGATTCTGGGGTATATACAAGTTCAAAGGGAAATTCCTTTAAGAGAGTTGGCTTAGAAATGGATGATGGTCTCGAAGACCAACATAGAGGTGCACCACACCAGGACAATTATCAGTCTAGTGGAGCAGAAGATTACATGTCTGATTGA
Predicted protein sequences of Glyma08g21490
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g21490.1 sequence type=predicted peptide gene model=Glyma08g21490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASYRPFPPQSSQIPNPIPGGNHQYNNNNNQNQNWGAYGDPSTSSFPQIPPNSNYHQNQHHVPYAPAPSNPHHPPHYPYPPPPPPPPPPEASYQPPPPPPPPAPMYYPSSSQYSNQPPPPPPPLSPPPPPPPVSPPPPPPATQNNNEERRFKEPSKSGRREYEHSNHGIAHKQHKQQQPPLPVKKMNNGPPGRAETDEEKRLRKKREFEKQRQEEKHRQQLKESQNTVLQKTHLLSSGKGHGMIAGSRMGERRSTPLLGAERVENRLKKPTTFLCKLKFRNELPDPSAQPKLMSFKKDKDQYAKYTITSLEKMYKPKLFVEPDLGIPLDLLDLSVYNPPRVRPPLAPEDEELLRDDEAATPIKKDGIKRKERPTDKGVAWLVKTQYISPLSMESTKQSLTEKQAKELREMKGRGILDNLNSRERQIREIQASFEAAKSDPVHATNKDLYPVEVMPLLPDFDRYDDQFVVAAFDNAPTADSEMYAKMNKSVRDAFESKAVMKSYVATGLDPANPEKFLAYMAPAPGELSKDIYDENEDVSYSWIREYHWDVRGDDADDPTTFLVAFDESEARYLPLPTKLVLRKKRAKEGRSGDEVEQCPVPARVTVRRRSSVAAIERKDSGVYTSSKGNSFKRVGLEMDDGLEDQHRGAPHQDNYQSSGAEDYMSD*