Glyma08g21450 - SoyBase

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Report for Sequence Feature Glyma08g21450

Feature Type:	gene_model
Chromosome:	Gm08
Start:	16289768
stop:	16295899
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g21450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G19860	AT	Annotation by Michelle Graham. TAIR10: hexokinase 2 \| chr2:8570818-8573762 FORWARD LENGTH=502	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0009747	GO-bp	Annotation by Michelle Graham. GO Biological Process: hexokinase-dependent signaling	SoyBase	N/A	ISS
GO:0010182	GO-bp	Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway	SoyBase	N/A	ISS
GO:0012501	GO-bp	Annotation by Michelle Graham. GO Biological Process: programmed cell death	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0031307	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to mitochondrial outer membrane	SoyBase	N/A	ISS
GO:0004340	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glucokinase activity	SoyBase	N/A	ISS
GO:0004396	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hexokinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008865	GO-mf	Annotation by Michelle Graham. GO Molecular Function: fructokinase activity	SoyBase	N/A	ISS
GO:0016773	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor	SoyBase	N/A	ISS
KOG1369	KOG	Hexokinase	JGI		ISS
PTHR19443	Panther	HEXOKINASE	JGI		ISS
PF00349	PFAM	Hexokinase	JGI		ISS
PF03727	PFAM	Hexokinase	JGI		ISS
UniRef100_G7LGP4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hexokinase n=1 Tax=Medicago truncatula RepID=G7LGP4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KV15	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KV15_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g21450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g21450 not represented in the dataset	Glyma08g21450 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g21450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g200600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g21450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g21450

Limit To All Plant Sequences

>Glyma08g21450.1   sequence type=CDS   gene model=Glyma08g21450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGAAGGTGGTGGTGTGTGCTACAGTGATCGGAGCGTGCACGGTGGTGGCGGTGGTGGTGCATAGGTACGCGAGGAAATGTCGACGGTGGGCAAAGGCGATAGAAATATTGAAGGAGTTGGAGGAGAAGTGTGCAACGCCAACGTGGAAGCTGAAGCTGGTTGCGGATGCCATGAACGTGGAGATGCATGCTGGTCTTGCTTCAGAAGGTGGTAGCAAGCTCAAGATGCTCATCACTTACGTTGATAAGCTCCCAACAGGGAATGAGGAAGGACTATATTATGCATTGGACCTTGGAGGGACTAATTTTCGCGTGTTACGTGTGCAATTGGGAGGCAAGTATGGTGGTATTATTAGTCAAGAATTCACTGAGGTTTCAATTCCTCCTAATTTGATGGTTGGAACATCAGATGAACTCTTTGACTATATTGCAGCAGAACTTGCAAAATTTGTTGCCCAAGAAAATCAAGATTTCCAAGTGTCTCCTGGTAGGCAGAGAGAGCTAGGTTTTACCTTTTCCTTTCCTGTCATGCAAACGTCACTTGCTTCTGGGAACCTTGTCAAGTGGACAAAAGGCTTCAACATAGACGGCACAGTTGGTCAAGATGTTGTGGCAGAATTAACTAAAGCCATTCGGAGACAAGGTCTTGATATGCGTGTAAATGCTCTGGTCAATGACACAGTTGGGACATTAGCAGGAGGTCGATATACAAACAGCAATGTTATTGCTGCGATTATTTTAGGTACTGGTACAAATGCAGCCTATGTGGAACGTGTTCAAGCAATACCAAAATGGCACGGTCCTTTGCCAGATTCTGGAGATATGGCTATCAACATGGAGTGGGGAAACTTCCGGTCATCACACCTTCCATTAACTGAGTATGACTGTGCATTAGATGCTGAGAGTTTCAGCCCTGGTGATCAGATTTTTGAGAAGATGACTTCTGGCTTGTACTTGGGAGAAATTGTTCGTCGAGTACTATGCAAAATAGCTGAAGAAGCTTTCTTTTTTGCTGACAATGTTCCCCCGAAACTTAAAATTCCGTTCATATTAAGTACACCTGACATGTGTGCAATGCATCATGATTCATCTACTGATCTCAATGTGGTAGGAAGCAAACTGAAGAACATTTTGGAGATATCTGATACCTCCCTGGAAGTGAGGAAGGTGGTTGTAGAGATCTGCAATATCATTGCCACCCGTGGTGCTCGTCTTTCTGCTGCTGGAATCTTAGGTATCCTGAAGAAGTTGGGAAAAGACACCAAGAGTGAAGTTGAGGGTCAGAAGAATGTGATAGCCATGGATGGTGGATTGTATGAGCATTACACTGAGTATAGCAAGTGCTTAGAGAATACCCTTAAAGAGTTGGTTGGTGAAGATATCTCAGAAAGTATCATCATTGAGCATTTCAATGACGGTTCAGGAGTTGGTGCTGCCCTTCTTGCAGCCTCTCACTCCCAGTACCTTGATGCTTAG

Predicted protein sequences of Glyma08g21450

Limit To All Plant Sequences

>Glyma08g21450.1   sequence type=predicted peptide   gene model=Glyma08g21450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRKVVVCATVIGACTVVAVVVHRYARKCRRWAKAIEILKELEEKCATPTWKLKLVADAMNVEMHAGLASEGGSKLKMLITYVDKLPTGNEEGLYYALDLGGTNFRVLRVQLGGKYGGIISQEFTEVSIPPNLMVGTSDELFDYIAAELAKFVAQENQDFQVSPGRQRELGFTFSFPVMQTSLASGNLVKWTKGFNIDGTVGQDVVAELTKAIRRQGLDMRVNALVNDTVGTLAGGRYTNSNVIAAIILGTGTNAAYVERVQAIPKWHGPLPDSGDMAINMEWGNFRSSHLPLTEYDCALDAESFSPGDQIFEKMTSGLYLGEIVRRVLCKIAEEAFFFADNVPPKLKIPFILSTPDMCAMHHDSSTDLNVVGSKLKNILEISDTSLEVRKVVVEICNIIATRGARLSAAGILGILKKLGKDTKSEVEGQKNVIAMDGGLYEHYTEYSKCLENTLKELVGEDISESIIIEHFNDGSGVGAALLAASHSQYLDA*

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