Glyma08g21440 - SoyBase

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Report for Sequence Feature Glyma08g21440

Feature Type:	gene_model
Chromosome:	Gm08
Start:	16283398
stop:	16288728
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g21440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32850	AT	Annotation by Michelle Graham. TAIR10: nuclear poly(a) polymerase \| chr4:15850134-15854351 FORWARD LENGTH=745	SoyBase	E_val: 0	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0006351	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0031123	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA 3'-end processing	SoyBase	N/A	ISS
GO:0043631	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA polyadenylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0004652	GO-mf	Annotation by Michelle Graham. GO Molecular Function: polynucleotide adenylyltransferase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016779	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotidyltransferase activity	SoyBase	N/A	ISS
KOG2245	KOG	Poly(A) polymerase and related nucleotidyltransferases	JGI		ISS
PTHR10682	Panther	POLY(A) POLYMERASE	JGI		ISS
PTHR10682:SF5	Panther	POLY(A) POLYMERASE-RELATED	JGI		ISS
PF01909	PFAM	Nucleotidyltransferase domain	JGI		ISS
PF04926	PFAM	Poly(A) polymerase predicted RNA binding domain	JGI		ISS
PF04928	PFAM	Poly(A) polymerase central domain	JGI		ISS
UniRef100_G7LGP7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Poly(A) polymerase n=1 Tax=Medicago truncatula RepID=G7LGP7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337CE9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337CE9 related cluster n=1 Tax=unknown RepID=UPI0002337CE9	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g21440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g21440 not represented in the dataset	Glyma08g21440 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g21440

Paralog	Evidence	Comments
Glyma07g01780	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g21440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g200500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g21440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g21440

Limit To All Plant Sequences

>Glyma08g21440.1   sequence type=CDS   gene model=Glyma08g21440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGGCTCGGAAGGGGTGGGAGCATCGTCGAAGCAATTCGGTGTCACGAAGCCCATATCAATGGCTGGCCCAACGGTTACTGATTTGCAGAGGACTCGTGAGTTAGAGAAGTTTCTCGCTGTTTCGGGGCTTTACGAGAGCAAGGAGGAAGCTGCCAAAAGGGAAGAGGTTCTTCACCGACTTGGAGAGATAGTGAAAAATTGGGTGAAGCAACTTACCCGCCTTAGGGGATACACTGATCAAATGGTGGAAGATGCAAATGCTGTCATTTTGACTTTTGGTTCTTATCGGCTTGGTGTTCATGGTCCTGGGGCTGATTTAGACACTTTATGCATTGGGCCGTCCTATGTAAACCGGGAGGAGGATTTTTTCTACACATTGCATGATATCTTAGCTAACATCGAGGAAGTCACAGAACTGCAACCAATTCCGGATGCTCATGTCCCAGTTATGAAATTCAAGTTTGATGGAATATCAATTGATCTCCTCTATGCCAGTATTTCTCGATTGATTGTACCTGAAGACTTGGATATATCTGATGTCTCTGTTCTACACAATGTTGATGAGCCTACCGTGCGAAGTTTGAATGGCTGTAGGGTTGCAGATCAAATTCTAAAGCTTGTTCCTAATGTTGAGCACTTTCGCACAACACTTCGTTGCTTGAAATTTTGGGCCAAAAGGCGAGGCATTTATTCTAATGTGACAGGTTTTCTTGGTGGTGTTAACTTGGCACTTCTTGTAGCTCGAGTGTGCCAGTTTTATCCAAAAGCAGTTCCAAGTATGCTTGTTTCTAGATTCTTCAGGGTATATACACAGTGGCGGTGGCCAACTCCTGTCATGTTATGTCCAATAGAGGAGAATGATCTTGGGTTTCCTGTTTGGCATCCTGGTAAAAATCCTCGTGACAGATCCCATCATATGCCAATCATTACCCCTGCCTATCCCTGTATGAATTCTAGTTATAATGTTTCTATGAGCACACTTCGTGTGATGATGGAGCAGTTCCAATATGGCAATAAAATCTGTGGGGAAATAGAATTGAGTAAAGATTGTTGGAAGGCTCTGTTTGAAAAGTATAGTTTCTTTGAAAGCTATAAAAACTACTTGCAAGTTGATGTAGTTGCTGCTGATGCCGATGACTTGCGCAGCTGGAAAGGTTGGGTGGAATCACGCCTTCGCCAGCTGACTTTGATGATTGAACGTGATACTTTTGGGAAGTTGCAATGTCATCCCTATCATCATGAGTTTGTCGATACTTCAAGGCAGTGTGCCCATTGTGCTTTCTTTATGGGTTTGCATAGGAAAGAGGGAGAAGTTGTTCAAGAAGGCCAGCAATTTGATATACGAGGGACAGTTGAAGAATTTCGGCATTCTGTTAATATGTACATGTTCTGGAAACCAGGGATGGAGATTTATGTTTCTCATGTTCGTAGAAGGCAAATTCCATGCTATGTGTTTCCTGATGGTTATAAACGATCTCGGCCATCAAGGCCAACATCACAATTTGAGAATTGTAAATCATTTCATAATAATGAGGTTTCTGTGACTGAACATGTGGAGAGAATCCGTAAGAGGAAGAACAATGATGGTGTGGATGTGAGGGAGGATGCTATAGTTAAAAGGCAATATGCTTGTCCTCCTGGGGATAGATTGGCAAGACGCAACAGCCTTGGTACTGGTGGTTTGTCTGTTGAAGCTGTATCTGATAGTCAAGAGTTGAGAAGTGTGGAGTGCAATCATTTGTCAAACAGTGGGCAAGATGATTTGGATAGAACAGAGTCTCCTGAAGCTGCTTCAAATTCTAGTGTGATTACATCTGTTGGTTCTTCTGAAGATATTGTATCTGTGTCAGTGGCTGGTTGTGTTGAGAACTCCAGGGGTGTTGAAATGATGAACAATGGAAGGTTTGAGGATACTACTTATGGGAATGATTCTGTCACACTGGTGAAAAATATAGTGGCCAGTGGAAATGAAGTGTTTCAGCATGAGCTACAGCAGCAGTTGCAGCCGAATGCAATGCTAGGGATGGTTCTTGATTCTGCAGAAAAGGTTCTCTCAGAAGCTGTGCAAGAGCCGGTGATAAGGAGATTGAGTCTACCATCGACAGTTTAG

Predicted protein sequences of Glyma08g21440

Limit To All Plant Sequences

>Glyma08g21440.1   sequence type=predicted peptide   gene model=Glyma08g21440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGSEGVGASSKQFGVTKPISMAGPTVTDLQRTRELEKFLAVSGLYESKEEAAKREEVLHRLGEIVKNWVKQLTRLRGYTDQMVEDANAVILTFGSYRLGVHGPGADLDTLCIGPSYVNREEDFFYTLHDILANIEEVTELQPIPDAHVPVMKFKFDGISIDLLYASISRLIVPEDLDISDVSVLHNVDEPTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGIYSNVTGFLGGVNLALLVARVCQFYPKAVPSMLVSRFFRVYTQWRWPTPVMLCPIEENDLGFPVWHPGKNPRDRSHHMPIITPAYPCMNSSYNVSMSTLRVMMEQFQYGNKICGEIELSKDCWKALFEKYSFFESYKNYLQVDVVAADADDLRSWKGWVESRLRQLTLMIERDTFGKLQCHPYHHEFVDTSRQCAHCAFFMGLHRKEGEVVQEGQQFDIRGTVEEFRHSVNMYMFWKPGMEIYVSHVRRRQIPCYVFPDGYKRSRPSRPTSQFENCKSFHNNEVSVTEHVERIRKRKNNDGVDVREDAIVKRQYACPPGDRLARRNSLGTGGLSVEAVSDSQELRSVECNHLSNSGQDDLDRTESPEAASNSSVITSVGSSEDIVSVSVAGCVENSRGVEMMNNGRFEDTTYGNDSVTLVKNIVASGNEVFQHELQQQLQPNAMLGMVLDSAEKVLSEAVQEPVIRRLSLPSTV*

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