Glyma08g21430 - SoyBase

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Report for Sequence Feature Glyma08g21430

Feature Type:	gene_model
Chromosome:	Gm08
Start:	16271106
stop:	16274388
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g21430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G16490	AT	Annotation by Michelle Graham. TAIR10: IQ-domain 26 \| chr3:5603962-5605489 REVERSE LENGTH=389	SoyBase	E_val: 1.00E-107	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PTHR10699	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR10699:SF9	Panther	CALMODULIN BINDING	JGI		ISS
PF00612	PFAM	IQ calmodulin-binding motif	JGI		ISS
UniRef100_G7LGP8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: IQ domain-containing protein n=1 Tax=Medicago truncatula RepID=G7LGP8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KV13	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KV13_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g21430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g21430

Paralog	Evidence	Comments
Glyma07g01760	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g21430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g200400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g21430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g21430

Limit To All Plant Sequences

>Glyma08g21430.2   sequence type=transcript   gene model=Glyma08g21430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCGCTTTTTGTCCTCTAATGCACTTCTTCACGAGGTCCTGTCAGAGGTTTATTTTCAAAAAATGTTCCATCTTTATCCATTTTTTCGCTCCCCTCACTATAATTTTTAAGATCGTGACTGAAAAAGTTGTGTGAAGTTATTATTATGGGGAAAGCTAGCAGGTGGTTGAAGGGGTTGTTGGGGATGAAGAAGGAGAAGGACCACAGTGACAATTCAGGCTCATTGGCTCCTGACAAGAAGGAGAAGAAAAGGTGGAGTTTTGCCAAGCCACCACCTTCTTCAGTTCCTGCCACTGATAACAACAACACCTGGCTCAGATCCTATATTTCTGAGACAGAGAATGAGCAGAACAAGCATGCAATTGCCGTGGCAGCCGCCACCGCTGCTGCTGCCGATGCCGCCGTGGCCGCCGCACAGGCGGCCGTGGCTGTTGTGAGGCTCACAAGCCAGGGGAGAGGGGCATTGTTCAGTGGAAGCAGGGAGAAATGGGCTGCTGTGAAGATCCAAACTTTTTTTAGAGGCTACTTGGCACGGAAGGCTCTTAGAGCACTGAAAGGATTGGTTAAGATACAAGCTCTTGTTAGAGGGTATTTGGTTAGAAAGAGGGCTGCTGCAACTCTTCACAGTATGCAAGCTCTAATAAGAGCTCAAACTGCTGTTAGAACACAGCGAGCTCGTCGTTCCATGAGCAAAGAAGACAGATTTCTACCTGAAGTTCTTGCAAGAAAACCTGTGGAACGATTTGATGAAACAAGGAGTGAATTCCACAGTAAAAGGCTACCTACATCCTATGAAACATCCTTGAATGGTTTTGATGAGAGCCCCAAGATTGTTGAAATTGACACATACAAGACTCGATCGAGGTCTAGGCGCTTCACCTCTACAATGTCTGAGTGTGGAGAAGACATGTCCTGCCATGCAATCTCATCCCCTCTTCCTTGTCCGGTCCCCGGTCGAATCTCGGTTCCTGATTGCAGACACATTCAAGATTTTGATTGGTACTACAACGTGGATGAGTGTAGATTCTCCACTGCTCATAGCACCCCGCGTTTCACAAACTATGTGAGGGCTAATGCTCCAGCTACACCAGCCAAGAGTGTTTGTGGAGACACTTTCTTCAGACCTTGCTCCAATTTCCCCAACTACATGGCCAATACTCAGTCATTCAATGCAAAACTAAGGTCTCACAGTGCTCCAAAGCAAAGACCTGAACCCAAGAAAAGGCTCTCACTCAATGAAATGATGGCAGCAAGAAACAGCATAAGTGGTGTTAGAATGCAAAGGCCATCATCCAATTTCTTTCCAGACTCAAGAAGAATCCTGGAATTTTTTACAATCACAAGGAATATTTGAGAGGCAATTGGAGTCTAAATGATGTTAGTAATATCTAGAATTTGTTTTTTTTTTTTTCACTTGTGCTTACAACTTACAAATTCAGGGATGAAATTCTCAATTCTCAATTCTGCTTGTGTACATTCTTTTAATTAAAGAGTTTTTTTTTTTTTTTTTCAATCATGCCCTTTCTCTTGTACCAAATGATTTACATCTATTAAAGAATTTGGCTTGGTCATTTTTAAGTACATAATTTTGCATACCAATTTTCTGG

>Glyma08g21430.3   sequence type=transcript   gene model=Glyma08g21430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTTTATTTTAGCCTTTAAAGTGGTTTTATTCGGTTACAGAACTTAACTCACAGTCCCAGCTTTTTCTTTCAAATAAAGCAATATAGTAGTAGTAGTAATAGTGAAAGAAAGGGAGAGCTCCCTTTCTTTGAACCCTTTTTACTCAATGCCCGGTTTGAACCAAGCTCACGGGATTGTTGTCAGTGGGTATCTTTCATATGTACTACACGTTGCTCCAGAATGTTAGAGAGAGATAGATTTTTTTTATAATCAATAGTTTAAGTGATGTGGATGCTAAGGATTCATGAGGAACGTACCTTAAAGACTCGCTGAGTACTTATATAATTACTTATAAATTATTTACTAATAAGATTCTTATATTGATAATAAAATTTAAATTTACATTTTTGTATAATTTGTGTTCGATCCTTACCTGATAAATACATAGAGCAACAAAGTAATAATATTGCATTTTTTTTAGCATAATAACATAGTGCAAAGTGAGATAAAGAGAGAAAGAGGAATTGGTTATTGTTGGTAGTACTTTGGTAGTGTTATTGGAGTGAGTGGGGTGGGAAGGGAATTCGGCGCTCTTTCTCTTTTTTGAATTCAAGATCAGGTAAGAAGCTGTTTGTTTTGTTTTGGGTGTTGGGGTTGGGGGGCTTTTCCCTATGATTATTATTGTCACTTATTTCATAGGATTTCACCTTTGTGCTTTGTCTGTAATTCTTGTCTCTTTACTCAAGAGGGGGTGAGATTTTGAAGCGTAATGGTTACTATTTTAATGTTGTTTTTTTTTTTCATTTCATTTGAGCCTCTGCTAACTTTCTGTGACCGCTTTTTGTCCTCTAATGCACTTCTTCACGAGGTCCTGTCAGAGGTTTATTTTCAAAAAATGTTCCATCTTTATCCATTTTTTCGCTCCCCTCACTATAATTTTTAAGGTTTGTTTGTTTGATGCCTTTCATTTTACCCCGTTTTATTAATCTTTTCAACCATCCTGCTCTCATCACTTCTCTTCTGCTAGATTCTTTACACTTTACATTACACCCTCTTTTGTTTCTTTGTCCCTCCAATTTTTAAAACCAAGAATTTTCATTTTCACCTGTCCCTTGTATATTGAACCATCTGTTTTCACTTGGTTGCTACACTTGTTCACTTACACAAGCAAAACCCCTCTTTATCTTTAACCAAAAGAGGCAAAGTTTGGCTTAACTTTGGCACCGTTTTCTCATTCCAGATCGTGACTGAAAAAGTTGTGTGAAGTTATTATTATGGGGAAAGCTAGCAGGTGGTTGAAGGGGTTGTTGGGGATGAAGAAGGAGAAGGACCACAGTGACAATTCAGGCTCATTGGCTCCTGACAAGAAGGAGAAGAAAAGGTGGAGTTTTGCCAAGCCACCACCTTCTTCAGTTCCTGCCACTGATAACAACAACACCTGGCTCAGATCCTATATTTCTGAGACAGAGAATGAGCAGAACAAGCATGCAATTGCCGTGGCAGCCGCCACCGCTGCTGCTGCCGATGCCGCCGTGGCCGCCGCACAGGCGGCCGTGGCTGTTGTGAGGCTCACAAGCCAGGGGAGAGGGGCATTGTTCAGTGGAAGCAGGGAGAAATGGGCTGCTGTGAAGATCCAAACTTTTTTTAGAGGCTACTTGGCACGGAAGGCTCTTAGAGCACTGAAAGGATTGGTTAAGATACAAGCTCTTGTTAGAGGGTATTTGGTTAGAAAGAGGGCTGCTGCAACTCTTCACAGTATGCAAGCTCTAATAAGAGCTCAAACTGCTGTTAGAACACAGCGAGCTCGTCGTTCCATGAGCAAAGAAGACAGATTTCTACCTGAAGTTCTTGCAAGAAAACCTGTGGAACGATTTGATGAAACAAGGAGTGAATTCCACAGTAAAAGGCTACCTACATCCTATGAAACATCCTTGAATGGTTTTGATGAGAGCCCCAAGATTGTTGAAATTGACACATACAAGACTCGATCGAGGTCTAGGCGCTTCACCTCTACAATGTCTGAGTGTGGAGAAGACATGTCCTGCCATGCAATCTCATCCCCTCTTCCTTGTCCGGTCCCCGGTCGAATCTCGGTTCCTGATTGCAGACACATTCAAGATTTTGATTGGTACTACAACGTGGATGAGTGTAGATTCTCCACTGCTCATAGCACCCCGCGTTTCACAAACTATGTGAGGGCTAATGCTCCAGCTACACCAGCCAAGAGTGTTTGTGGAGACACTTTCTTCAGACCTTGCTCCAATTTCCCCAACTACATGGCCAATACTCAGTCATTCAATGCAAAACTAAGGTCTCACAGTGCTCCAAAGCAAAGACCTGAACCCAAGAAAAGGCTCTCACTCAATGAAATGATGGCAGCAAGAAACAGCATAAGTGGTGTTAGAATGCAAAGGCCATCATCCAATTTCTTTCCAGACTCAAGAAGAATCCTGGAATTTTTTACAATCACAAGGAATATTTGAGAGGCAATTGGAGTCTAAATGATGTTAGTAATATCTAGAATTTGTTTTTTTTTTTTTCACTTGTGCTTACAACTTACAAATTCAGGGATGAAATTCTCAATTCTCAATTCTGCTTGTGTACATTCTTTTAATTAAAGAGTTTTTTTTTTTTTTTTTCAATCATGCCCTTTCTCTTGTACCAAATGATTTACATCTATTAAAGAATTTGGCTTGGTCATTTTTAAGTACATAATTTTGCATACCAATTTTCTGG

Coding sequences of Glyma08g21430

Limit To All Plant Sequences

>Glyma08g21430.1   sequence type=CDS   gene model=Glyma08g21430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAAGCTAGCAGGTGGTTGAAGGGGTTGTTGGGGATGAAGAAGGAGAAGGACCACAGTGACAATTCAGGCTCATTGGCTCCTGACAAGAAGGAGAAGAAAAGGTGGAGTTTTGCCAAGCCACCACCTTCTTCAGTTCCTGCCACTGATAACAACAACACCTGGCTCAGATCCTATATTTCTGAGACAGAGAATGAGCAGAACAAGCATGCAATTGCCGTGGCAGCCGCCACCGCTGCTGCTGCCGATGCCGCCGTGGCCGCCGCACAGGCGGCCGTGGCTGTTGTGAGGCTCACAAGCCAGGGGAGAGGGGCATTGTTCAGTGGAAGCAGGGAGAAATGGGCTGCTGTGAAGATCCAAACTTTTTTTAGAGGCTACTTGGCACGGAAGGCTCTTAGAGCACTGAAAGGATTGGTTAAGATACAAGCTCTTGTTAGAGGGTATTTGGTTAGAAAGAGGGCTGCTGCAACTCTTCACAGTATGCAAGCTCTAATAAGAGCTCAAACTGCTGTTAGAACACAGCGAGCTCGTCGTTCCATGAGCAAAGAAGACAGATTTCTACCTGAAGTTCTTGCAAGAAAACCTGAACGATTTGATGAAACAAGGAGTGAATTCCACAGTAAAAGGCTACCTACATCCTATGAAACATCCTTGAATGGTTTTGATGAGAGCCCCAAGATTGTTGAAATTGACACATACAAGACTCGATCGAGGTCTAGGCGCTTCACCTCTACAATGTCTGAGTGTGGAGAAGACATGTCCTGCCATGCAATCTCATCCCCTCTTCCTTGTCCGGTCCCCGGTCGAATCTCGGTTCCTGATTGCAGACACATTCAAGATTTTGATTGGTACTACAACGTGGATGAGTGTAGATTCTCCACTGCTCATAGCACCCCGCGTTTCACAAACTATGTGAGGGCTAATGCTCCAGCTACACCAGCCAAGAGTGTTTGTGGAGACACTTTCTTCAGACCTTGCTCCAATTTCCCCAACTACATGGCCAATACTCAGTCATTCAATGCAAAACTAAGGTCTCACAGTGCTCCAAAGCAAAGACCTGAACCCAAGAAAAGGCTCTCACTCAATGAAATGATGGCAGCAAGAAACAGCATAAGTGGTGTTAGAATGCAAAGGCCATCATCCAATTTCTTTCCAGACTCAAGAAGAATCCTGGAATTTTTTACAATCACAAGGAATATTTGA

>Glyma08g21430.2   sequence type=CDS   gene model=Glyma08g21430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAAGCTAGCAGGTGGTTGAAGGGGTTGTTGGGGATGAAGAAGGAGAAGGACCACAGTGACAATTCAGGCTCATTGGCTCCTGACAAGAAGGAGAAGAAAAGGTGGAGTTTTGCCAAGCCACCACCTTCTTCAGTTCCTGCCACTGATAACAACAACACCTGGCTCAGATCCTATATTTCTGAGACAGAGAATGAGCAGAACAAGCATGCAATTGCCGTGGCAGCCGCCACCGCTGCTGCTGCCGATGCCGCCGTGGCCGCCGCACAGGCGGCCGTGGCTGTTGTGAGGCTCACAAGCCAGGGGAGAGGGGCATTGTTCAGTGGAAGCAGGGAGAAATGGGCTGCTGTGAAGATCCAAACTTTTTTTAGAGGCTACTTGGCACGGAAGGCTCTTAGAGCACTGAAAGGATTGGTTAAGATACAAGCTCTTGTTAGAGGGTATTTGGTTAGAAAGAGGGCTGCTGCAACTCTTCACAGTATGCAAGCTCTAATAAGAGCTCAAACTGCTGTTAGAACACAGCGAGCTCGTCGTTCCATGAGCAAAGAAGACAGATTTCTACCTGAAGTTCTTGCAAGAAAACCTGTGGAACGATTTGATGAAACAAGGAGTGAATTCCACAGTAAAAGGCTACCTACATCCTATGAAACATCCTTGAATGGTTTTGATGAGAGCCCCAAGATTGTTGAAATTGACACATACAAGACTCGATCGAGGTCTAGGCGCTTCACCTCTACAATGTCTGAGTGTGGAGAAGACATGTCCTGCCATGCAATCTCATCCCCTCTTCCTTGTCCGGTCCCCGGTCGAATCTCGGTTCCTGATTGCAGACACATTCAAGATTTTGATTGGTACTACAACGTGGATGAGTGTAGATTCTCCACTGCTCATAGCACCCCGCGTTTCACAAACTATGTGAGGGCTAATGCTCCAGCTACACCAGCCAAGAGTGTTTGTGGAGACACTTTCTTCAGACCTTGCTCCAATTTCCCCAACTACATGGCCAATACTCAGTCATTCAATGCAAAACTAAGGTCTCACAGTGCTCCAAAGCAAAGACCTGAACCCAAGAAAAGGCTCTCACTCAATGAAATGATGGCAGCAAGAAACAGCATAAGTGGTGTTAGAATGCAAAGGCCATCATCCAATTTCTTTCCAGACTCAAGAAGAATCCTGGAATTTTTTACAATCACAAGGAATATTTGA

>Glyma08g21430.3   sequence type=CDS   gene model=Glyma08g21430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAAGCTAGCAGGTGGTTGAAGGGGTTGTTGGGGATGAAGAAGGAGAAGGACCACAGTGACAATTCAGGCTCATTGGCTCCTGACAAGAAGGAGAAGAAAAGGTGGAGTTTTGCCAAGCCACCACCTTCTTCAGTTCCTGCCACTGATAACAACAACACCTGGCTCAGATCCTATATTTCTGAGACAGAGAATGAGCAGAACAAGCATGCAATTGCCGTGGCAGCCGCCACCGCTGCTGCTGCCGATGCCGCCGTGGCCGCCGCACAGGCGGCCGTGGCTGTTGTGAGGCTCACAAGCCAGGGGAGAGGGGCATTGTTCAGTGGAAGCAGGGAGAAATGGGCTGCTGTGAAGATCCAAACTTTTTTTAGAGGCTACTTGGCACGGAAGGCTCTTAGAGCACTGAAAGGATTGGTTAAGATACAAGCTCTTGTTAGAGGGTATTTGGTTAGAAAGAGGGCTGCTGCAACTCTTCACAGTATGCAAGCTCTAATAAGAGCTCAAACTGCTGTTAGAACACAGCGAGCTCGTCGTTCCATGAGCAAAGAAGACAGATTTCTACCTGAAGTTCTTGCAAGAAAACCTGTGGAACGATTTGATGAAACAAGGAGTGAATTCCACAGTAAAAGGCTACCTACATCCTATGAAACATCCTTGAATGGTTTTGATGAGAGCCCCAAGATTGTTGAAATTGACACATACAAGACTCGATCGAGGTCTAGGCGCTTCACCTCTACAATGTCTGAGTGTGGAGAAGACATGTCCTGCCATGCAATCTCATCCCCTCTTCCTTGTCCGGTCCCCGGTCGAATCTCGGTTCCTGATTGCAGACACATTCAAGATTTTGATTGGTACTACAACGTGGATGAGTGTAGATTCTCCACTGCTCATAGCACCCCGCGTTTCACAAACTATGTGAGGGCTAATGCTCCAGCTACACCAGCCAAGAGTGTTTGTGGAGACACTTTCTTCAGACCTTGCTCCAATTTCCCCAACTACATGGCCAATACTCAGTCATTCAATGCAAAACTAAGGTCTCACAGTGCTCCAAAGCAAAGACCTGAACCCAAGAAAAGGCTCTCACTCAATGAAATGATGGCAGCAAGAAACAGCATAAGTGGTGTTAGAATGCAAAGGCCATCATCCAATTTCTTTCCAGACTCAAGAAGAATCCTGGAATTTTTTACAATCACAAGGAATATTTGA

Predicted protein sequences of Glyma08g21430

Limit To All Plant Sequences

>Glyma08g21430.1   sequence type=predicted peptide   gene model=Glyma08g21430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKASRWLKGLLGMKKEKDHSDNSGSLAPDKKEKKRWSFAKPPPSSVPATDNNNTWLRSYISETENEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGALFSGSREKWAAVKIQTFFRGYLARKALRALKGLVKIQALVRGYLVRKRAAATLHSMQALIRAQTAVRTQRARRSMSKEDRFLPEVLARKPERFDETRSEFHSKRLPTSYETSLNGFDESPKIVEIDTYKTRSRSRRFTSTMSECGEDMSCHAISSPLPCPVPGRISVPDCRHIQDFDWYYNVDECRFSTAHSTPRFTNYVRANAPATPAKSVCGDTFFRPCSNFPNYMANTQSFNAKLRSHSAPKQRPEPKKRLSLNEMMAARNSISGVRMQRPSSNFFPDSRRILEFFTITRNI*

>Glyma08g21430.2   sequence type=predicted peptide   gene model=Glyma08g21430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKASRWLKGLLGMKKEKDHSDNSGSLAPDKKEKKRWSFAKPPPSSVPATDNNNTWLRSYISETENEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGALFSGSREKWAAVKIQTFFRGYLARKALRALKGLVKIQALVRGYLVRKRAAATLHSMQALIRAQTAVRTQRARRSMSKEDRFLPEVLARKPVERFDETRSEFHSKRLPTSYETSLNGFDESPKIVEIDTYKTRSRSRRFTSTMSECGEDMSCHAISSPLPCPVPGRISVPDCRHIQDFDWYYNVDECRFSTAHSTPRFTNYVRANAPATPAKSVCGDTFFRPCSNFPNYMANTQSFNAKLRSHSAPKQRPEPKKRLSLNEMMAARNSISGVRMQRPSSNFFPDSRRILEFFTITRNI*

>Glyma08g21430.3   sequence type=predicted peptide   gene model=Glyma08g21430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKASRWLKGLLGMKKEKDHSDNSGSLAPDKKEKKRWSFAKPPPSSVPATDNNNTWLRSYISETENEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGALFSGSREKWAAVKIQTFFRGYLARKALRALKGLVKIQALVRGYLVRKRAAATLHSMQALIRAQTAVRTQRARRSMSKEDRFLPEVLARKPVERFDETRSEFHSKRLPTSYETSLNGFDESPKIVEIDTYKTRSRSRRFTSTMSECGEDMSCHAISSPLPCPVPGRISVPDCRHIQDFDWYYNVDECRFSTAHSTPRFTNYVRANAPATPAKSVCGDTFFRPCSNFPNYMANTQSFNAKLRSHSAPKQRPEPKKRLSLNEMMAARNSISGVRMQRPSSNFFPDSRRILEFFTITRNI*

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