Glyma08g21410 - SoyBase

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Report for Sequence Feature Glyma08g21410

Feature Type:	gene_model
Chromosome:	Gm08
Start:	16249535
stop:	16251605
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g21410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G25150	AT	Annotation by Michelle Graham. TAIR10: HAD superfamily, subfamily IIIB acid phosphatase \| chr4:12901736-12902882 REVERSE LENGTH=260	SoyBase	E_val: 2.00E-65	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003993	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid phosphatase activity	SoyBase	N/A	ISS
PTHR11726	Panther	60S RIBOSOMAL PROTEIN L10	JGI		ISS
PTHR11726:SF1	Panther	50S RIBOSOMAL PROTEIN L10E	JGI		ISS
PF03767	PFAM	HAD superfamily, subfamily IIIB (Acid phosphatase)	JGI		ISS
UniRef100_P10743	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Stem 31 kDa glycoprotein n=1 Tax=Glycine max RepID=VSPB_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_P10743	UniRef	Annotation by Michelle Graham. Best UniRef hit: Stem 31 kDa glycoprotein n=1 Tax=Glycine max RepID=VSPB_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma08g21410

Locus	Gene Symbol	Protein Name
	VSP	Vegetative storage storage protein

Expression Patterns of Glyma08g21410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g21410

Paralog	Evidence	Comments
Glyma07g01730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g21410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g200100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g21410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g21410

Limit To All Plant Sequences

>Glyma08g21410.2   sequence type=transcript   gene model=Glyma08g21410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGGCGTTGCCTATTTAAAGAAGCTAACCCTCCACAAGGAATTAAGGTGCAAGAGTTTGTTGTGAGCTATAAGCTAGTTTATCGTGAGGAGAATATGAAGTTGTTTGTTTTCTTTGTTGCTGCAGTAGTTTTGGTAGCATGGCCATGCCATGGCGCAGGCTACCAAAGGTTCCCTCTCCGAATGAAAACTGGCTATGGTGAGCGTTCTTCGGAGGTAAAATGCGCAAGTTTTAGGCTTGCTGTGGAAGCACACAACATCCGAGCCTTTAAAACCATTCCTGAAGAGTGCGTTGAACCAACAAAGGACTACATTAATGGCGAACAATTTAGATCAGACTCTAAAACAGTTAACCAACAAGCTTTCTTTTATGCTAGTGAACGCGAAGTCCATCACAACGACATATTTATATTCGGCATAGATAACACCGTACTCTCTAATATCCCATACTATGAAAAACATGGATATGGGGTGGAGGAATTTAATGAAACCTTATATGATGAATGGGTTAACAAGGGCGACGCACCGGCATTGCCAGAGACTCTTAAAAATTACAACAAGCTGTTGTCTCTTGGCTTCAAGATTGTATTCTTGTCAGGAAGATATCTTGACAAAATGGCCGTAACAGAAGCAAACCTAAAGAAGGCTGGCTTCCACACATGGGAGCAGTTAATTCTCAAGTATGTTTCCTTTTTTCTCTCTATAGATATAACTTATTTATCTTTTATATATAACAAGTGCTGTTGGTTAACAAGTCATTGATATCAATAATACTGAATTCAACCATTTCAAATAATGTGATGAGTTTGAAATACTAATTGGATCTATTTTTGGTTGGTGTAGGGATCCACATCTTATCACTCCAAATGCACTTTCATACAAATCAGCAATGAGAGAGAATCTGTTGAGGCAGGGATACAGAATTGTTGGAATCATTGGAGACCAATGGAGCGATCTGCTTGGAGACCACAGAGGCGAAAGCAGGACCTTTAAGCTTCCTAATCCCATGTACTACATTGAGTAGTACCTTCACCTCTCTCAACAATCTAGCTAGAGTTTGCTCCTATCTATATGTAATAAGGTATGCTGATATGCACTATTCAAATAGGAGCATTAGCTATGTTTGTTAATGTCACTTTATGTTATGTGGGTAAGTCACCTAAGACACTCCACGTACCTACTTGTTGTCTCTTACGCGGCTTTAATAAATCTTCTGCCCTTGTTCCATATTTACTAATTATCCCTTTCTTCACTAAAAGAAAATTGTTATCATTAAGTATTAGTCTT

Coding sequences of Glyma08g21410

Limit To All Plant Sequences

>Glyma08g21410.1   sequence type=CDS   gene model=Glyma08g21410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTTGTTTGTTTTCTTTGTTGCTGCAGTAGTTTTGGTAGCATGGCCATGCCATGGCGCAGGCTACCAAAGGTTCCCTCTCCGAATGAAAACTGGCTATGGTGAGCGTTCTTCGGAGGTAAAATGCGCAAGTTTTAGGCTTGCTGTGGAAGCACACAACATCCGAGCCTTTAAAACCATTCCTGAAGAGTGCGTTGAACCAACAAAGGACTACATTAATGGCGAACAATTTAGATCAGACTCTAAAACAGTTAACCAACAAGCTTTCTTTTATGCTAGTGAACGCGAAGTCCATCACAACGACATATTTATATTCGGCATAGATAACACCGTACTCTCTAATATCCCATACTATGAAAAACATGGATATGGGGTGGAGGAATTTAATGAAACCTTATATGATGAATGGGTTAACAAGGGCGACGCACCGGCATTGCCAGAGACTCTTAAAAATTACAACAAGCTGTTGTCTCTTGGCTTCAAGATTGTATTCTTGTCAGGAAGATATCTTGACAAAATGGCCGTAACAGAAGCAAACCTAAAGAAGGCTGGCTTCCACACATGGGAGCAGTTAATTCTCAAGGATCCACATCTTATCACTCCAAATGCACTTTCATACAAATCAGCAATGAGAGAGAATCTGTTGAGGCAGGGATACAGAATTGTTGGAATCATTGGAGACCAATGGAGCGATCTGCTTGGAGACCACAGAGGCGAAAGCAGGACCTTTAAGCTTCCTAATCCCATGTACTACATTGAGTAG

>Glyma08g21410.2   sequence type=CDS   gene model=Glyma08g21410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTTGTTTGTTTTCTTTGTTGCTGCAGTAGTTTTGGTAGCATGGCCATGCCATGGCGCAGGCTACCAAAGGTTCCCTCTCCGAATGAAAACTGGCTATGGTGAGCGTTCTTCGGAGGTAAAATGCGCAAGTTTTAGGCTTGCTGTGGAAGCACACAACATCCGAGCCTTTAAAACCATTCCTGAAGAGTGCGTTGAACCAACAAAGGACTACATTAATGGCGAACAATTTAGATCAGACTCTAAAACAGTTAACCAACAAGCTTTCTTTTATGCTAGTGAACGCGAAGTCCATCACAACGACATATTTATATTCGGCATAGATAACACCGTACTCTCTAATATCCCATACTATGAAAAACATGGATATGGGGTGGAGGAATTTAATGAAACCTTATATGATGAATGGGTTAACAAGGGCGACGCACCGGCATTGCCAGAGACTCTTAAAAATTACAACAAGCTGTTGTCTCTTGGCTTCAAGATTGTATTCTTGTCAGGAAGATATCTTGACAAAATGGCCGTAACAGAAGCAAACCTAAAGAAGGCTGGCTTCCACACATGGGAGCAGTTAATTCTCAAGTATGTTTCCTTTTTTCTCTCTATAGATATAACTTATTTATCTTTTATATATAACAAGTGCTGTTGGTTAACAAGTCATTGA

Predicted protein sequences of Glyma08g21410

Limit To All Plant Sequences

>Glyma08g21410.1   sequence type=predicted peptide   gene model=Glyma08g21410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLFVFFVAAVVLVAWPCHGAGYQRFPLRMKTGYGERSSEVKCASFRLAVEAHNIRAFKTIPEECVEPTKDYINGEQFRSDSKTVNQQAFFYASEREVHHNDIFIFGIDNTVLSNIPYYEKHGYGVEEFNETLYDEWVNKGDAPALPETLKNYNKLLSLGFKIVFLSGRYLDKMAVTEANLKKAGFHTWEQLILKDPHLITPNALSYKSAMRENLLRQGYRIVGIIGDQWSDLLGDHRGESRTFKLPNPMYYIE*

>Glyma08g21410.2   sequence type=predicted peptide   gene model=Glyma08g21410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLFVFFVAAVVLVAWPCHGAGYQRFPLRMKTGYGERSSEVKCASFRLAVEAHNIRAFKTIPEECVEPTKDYINGEQFRSDSKTVNQQAFFYASEREVHHNDIFIFGIDNTVLSNIPYYEKHGYGVEEFNETLYDEWVNKGDAPALPETLKNYNKLLSLGFKIVFLSGRYLDKMAVTEANLKKAGFHTWEQLILKYVSFFLSIDITYLSFIYNKCCWLTSH*

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