SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G50340 | AT | Annotation by Michelle Graham. TAIR10: ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases | chr5:20491635-20495830 REVERSE LENGTH=587 | SoyBase | E_val: 0 | ISS |
| GO:0006260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication | SoyBase | N/A | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0009295 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleoid | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003678 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA helicase activity | SoyBase | N/A | ISS |
| GO:0003684 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: damaged DNA binding | SoyBase | N/A | ISS |
| GO:0004176 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent peptidase activity | SoyBase | N/A | ISS |
| GO:0004252 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| PTHR10046 | Panther | ATP DEPENDENT LON PROTEASE FAMILY MEMBER | JGI | ISS | |
| PTHR10046:SF25 | Panther | DNA REPAIR PROTEIN RADA | JGI | ISS | |
| PF05362 | PFAM | Lon protease (S16) C-terminal proteolytic domain | JGI | ISS | |
| PF06745 | PFAM | KaiC | JGI | ISS | |
| UniRef100_G7LGQ6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA repair protein radA-like protein n=1 Tax=Medicago truncatula RepID=G7LGQ6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KV06 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KV06_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g21360 not represented in the dataset |
Glyma08g21360 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g01700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g199700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g21360.1 sequence type=CDS gene model=Glyma08g21360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTTCCTTCTCTGTTTCTGGTTTCCCTCCATTCCCACTTCGCAGGGCATATCCAAGAAGAGTAAGTGCAAGCTTTGACATTGACACCCCACAAGACCCCAATTCAGTCAACCCTAATGGCTCGAATGCTAAATTTGAAGAAGAAGAAGAAGAATTTCGAAAGGGAAAGGAGAGAGGGAGAGTGATAGGTGGTGGTGGGGTTTTCATTGGAAGGAAGAAGAAGGCGGGGAAGGAGAAAGTTCAATGGGTTTGCTGCAATTGTGGGTACAGTGCAGGGCAATGGTGGGGCATGTGTCGATCATGCAGTGTATCTGGCACTATGAAAGAAGCCAAATTTAGTGATGCTGATACTGTGGTTAGTGGGTTTTCAGTTTTGGAGGATGGTGTTGTGGGGTCTTGGCTACCGCAACAGGAAGGTGAAATGCGCCCCTTGAGATTGACAGAGGTAAACAAGGGACTTGATCATCACCATTGGAGAATTCCTCTGTCTGGTCCATTTGGAGATGAAGTTTCCAGAGTGTTTGGTGGTGGTCTTGTACCAGGCTCATTGACTTTAATTGGTGGTGATCCTGGTGTTGGGAAGAGTACTTTGTTGTTGCAGATAGCTGCAATTATTGCAAAAGGTGACAGTGATGGTGAAGCATGTCCAGTTGTATATGTCTCTGGTGAAGAGAGTGTTGAGCAAATTGGTAACAGAGCAGATCGCCTTAGGATTGAATCAGATATTTATTTATATTCAAGTAATGATGTTGAGGACATACTGAAGAAAGTACAGTATCTCTCCCCTGGGGCTCTTATTGTTGATTCGATACAAACTGTTTATTTAAAAGGAATAATGGGAAGTCCTGGAGGGATTATGCAGGTGAAAGAATGTACTTCAGCTTTACTGCGATTTGCGAAGAAGACAAACATCCCAGTTCTTTTGATTGGACATGTGACAAAATCTGGAGACATTGCAGGACCTCGTGTCTTGGAGCATATTGTTGATGTTGTTTTGTATATGGAAGGTGAGAAGTACTCTTCTCATCGTATGCTTCGAGCTGTGAAAAACCGATTTGGATCTGCTGATGAGCTTGGGGTTTTTGAGATGTCACATTCAGGACTTCAGGCTGTTTCAAATGCCAGTGAAATGTTTCTCAGTGAACAGCTCCTGGATTCAGAAATATTAGCTGGACTAGCTGTTGCTGTAATCATGGATGGGTCCCGGACATTCCTTATTGAAATTCAGGCACTTTGTCTTTCTGGTTCAACAGGTTCAAGGCAAGTTAATGGGATCCAACAAAAAAGAGCTGATATGATCATATCTGTTCTTATAAAGCAAGCAGGTCTTCGTCTCCAAGAACATGCTGTATTTTTGAATGTTGTTAGTGGATTGGCACTGACTGAGACTGCAGGAGATCTAGCTATAGCAGCAGCAATTTGCAGCAGTTGCTTGGAAATCCCTATTCCAAATGACATTGCATTCATTGGTGAAATTGGCCTTGGTGGTGAGCTTCGCATGGTTCCTAGAATGGAGAAAAGGGTATATACCGTTGCGAAATTGGGTTACAGAATGTGTATAGTACCCAAGGTGGCTGAAAAAGCTTTGGGAACCGAAGGTTTAGAAAAGATGGAAGTTGTTGGTTGCAGGAATCTGAAAGAGGTTATTAACACTGTATTCCTTAATATAATGAGGAGGTAG
>Glyma08g21360.1 sequence type=predicted peptide gene model=Glyma08g21360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLSFSVSGFPPFPLRRAYPRRVSASFDIDTPQDPNSVNPNGSNAKFEEEEEEFRKGKERGRVIGGGGVFIGRKKKAGKEKVQWVCCNCGYSAGQWWGMCRSCSVSGTMKEAKFSDADTVVSGFSVLEDGVVGSWLPQQEGEMRPLRLTEVNKGLDHHHWRIPLSGPFGDEVSRVFGGGLVPGSLTLIGGDPGVGKSTLLLQIAAIIAKGDSDGEACPVVYVSGEESVEQIGNRADRLRIESDIYLYSSNDVEDILKKVQYLSPGALIVDSIQTVYLKGIMGSPGGIMQVKECTSALLRFAKKTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYMEGEKYSSHRMLRAVKNRFGSADELGVFEMSHSGLQAVSNASEMFLSEQLLDSEILAGLAVAVIMDGSRTFLIEIQALCLSGSTGSRQVNGIQQKRADMIISVLIKQAGLRLQEHAVFLNVVSGLALTETAGDLAIAAAICSSCLEIPIPNDIAFIGEIGLGGELRMVPRMEKRVYTVAKLGYRMCIVPKVAEKALGTEGLEKMEVVGCRNLKEVINTVFLNIMRR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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