SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G14520 | AT | Annotation by Michelle Graham. TAIR10: myo-inositol oxygenase 1 | chr1:4968376-4969954 REVERSE LENGTH=309 | SoyBase | E_val: 3.00E-175 | ISS |
| GO:0006949 | GO-bp | Annotation by Michelle Graham. GO Biological Process: syncytium formation | SoyBase | N/A | ISS |
| GO:0019310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: inositol catabolic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005506 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron ion binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0050113 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: inositol oxygenase activity | SoyBase | N/A | ISS |
| KOG1573 | KOG | Aldehyde reductase | JGI | ISS | |
| PTHR12588 | Panther | MYOINOSITOL OXYGENASE | JGI | ISS | |
| PF05153 | PFAM | Family of unknown function (DUF706) | JGI | ISS | |
| UniRef100_F4HW72 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Inositol oxygenase 1 n=1 Tax=Arabidopsis thaliana RepID=F4HW72_ARATH | SoyBase | E_val: 1.00E-172 | ISS |
| UniRef100_I1KV01 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KV01_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g21300 not represented in the dataset |
Glyma08g21300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g01660 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g199300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g21300.1 sequence type=CDS gene model=Glyma08g21300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACTATCCTCATTGAGCAATCTGATCACTTTGGGGCTGAAGTAGAGGCAAAGACTGAACCAATAAATGAGAGAGAACTGGTGTTGGATGGTGGATTTCTGATAACACAGACCAACTCATTTGGGCACATGTTTAGGGCTTATAATGATGCTGAAAGTGAGAGGCATGAAGGAGTGGAGAACTTCTACAGAAAAAATCACACTTACCAATCAATTGATTTCGTGAAGAAAATGAGAGAGGAGTACGCAAAATTGAACAGGGTAGAGATGAGCATATGGGAATGTTGTGAACTCCTTAATGAAGTGGTGGATGAGAGTGACCCTGACTTGGATGAACCTCAGATTGAACACTTGCTCCAGACAGCCGAAGCTATAAGGAGGGACTACCCTGATGAAGATTGGTTGCACCTAACTGGCCTTATCCATGATCTTGGCAAGGTGCTGAATTTGCCTAGTTTTGGAGGACTTCCTCAATGGGCTGTAGTAGGGGACATATTCCCTGTTGGTTGCAGATTTGATGAGTCCATTGTTCACCACAAGTATTTTAAGGAAAATCCAGACTACAACAATCCAGCATACAACACTAAATATGGGATTTACTCAGAGAGATGTGGACTTAACAATGTGATGATGTCATGGGGACACGATGACTACATGTATCTAGTGGCAAAGGAGAATGATACTACACTGCCCTCTGCGGCTTTGTTCATTATAAGATACCATTCATTCTATGCATTACATAAGGAAGGAGCCTATAAGCACTTGATGAATGATGAGGATTTTGAGAATCTGAAATGGCTCCATATTTTCAACAAATATGACCTTTACAGCAAGAGCAAAATTCGAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAGTACTTCCCTGCAAAGCTGAAGTGGTGA
>Glyma08g21300.1 sequence type=predicted peptide gene model=Glyma08g21300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTILIEQSDHFGAEVEAKTEPINERELVLDGGFLITQTNSFGHMFRAYNDAESERHEGVENFYRKNHTYQSIDFVKKMREEYAKLNRVEMSIWECCELLNEVVDESDPDLDEPQIEHLLQTAEAIRRDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDIFPVGCRFDESIVHHKYFKENPDYNNPAYNTKYGIYSERCGLNNVMMSWGHDDYMYLVAKENDTTLPSAALFIIRYHSFYALHKEGAYKHLMNDEDFENLKWLHIFNKYDLYSKSKIRIDVERVRPYYLSLIEKYFPAKLKW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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