Report for Sequence Feature Glyma08g21290
Feature Type: gene_model
Chromosome: Gm08
Start: 16161686
stop: 16165319
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g21290
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G21350 AT
Annotation by Michelle Graham. TAIR10: RNA polymerase transcriptional regulation mediator-related | chr3:7517106-7518587 FORWARD LENGTH=257
SoyBase E_val: 2.00E-108 ISS
GO:0006357 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription from RNA polymerase II promoter
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0016592 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mediator complex
SoyBase N/A ISS
KOG3169
KOG
RNA polymerase II transcriptional regulation mediator
JGI ISS
PTHR13104 Panther
MED-6-RELATED
JGI ISS
PF04934 PFAM
MED6 mediator sub complex component
JGI ISS
UniRef100_B9RQ93 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: RNA polymerase II mediator complex subunit, putative n=1 Tax=Ricinus communis RepID=B9RQ93_RICCO
SoyBase E_val: 2.00E-131 ISS
UniRef100_I1KV00 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KV00_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g21290
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g21290
Paralog Evidence Comments
Glyma07g01650 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g21290 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g199200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g21290
Coding sequences of Glyma08g21290
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g21290.2 sequence type=CDS gene model=Glyma08g21290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGACGGCGCCGGGAAATCAAATGTTGGAGGGCGGAGGAGGAGCGCCGCAGCCTCCGGGTACAGACATGACCGGAATATGCTTCCGGGATCAGCTCTGGCTCAATAGCTTCCCTCTGGATCGCAACTTGGTCTTCGATTACTTCGCACTCTCCCCTTTCTACGACTGGACCTGCAACAACGAGCAGCTCCGCATGCGCTCCGTTCACCCCCTCGACATCTCTCAACTCTCGAAAATGACGGGGACGGAGTATATGCTCAGCGAAGTTATGGAGCCGCACCTGTTTGTCATTCGCAAGCAGAAGAGAGATAGCCCCGACAAAGTTACACCTATGCTCGCGTATTACGTCCTCGATGGTTCCATTTACCAGGCACCGCAACTGTGCAATGTTTTTGCCGCCAGAATTGGAAGGGCCCTTTATTACATACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATGCTGATTCTGAAAATGAGACTGCATTGTTGGAATCAAAGACTGCTAAGGAGACAATTGACATAAAGGAAGTTAAGCGAGTTGATCATATTCTTGCATCCTTGCAACGCAAGTTACCACCAGCTCCTCCTCCACCACCATTTCCAGAAGGTTATGTTCCACCTCCAACTGCAGAAACGGAGAAAGGCACTGAAACTCAAGAAGCAGCAGAAACGCAAGCTCCTACTGCTGATCCGATAATTGATCAAGGACCAGCAAAAAGAATGAAATTTTGA
Predicted protein sequences of Glyma08g21290
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g21290.2 sequence type=predicted peptide gene model=Glyma08g21290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MATAPGNQMLEGGGGAPQPPGTDMTGICFRDQLWLNSFPLDRNLVFDYFALSPFYDWTCNNEQLRMRSVHPLDISQLSKMTGTEYMLSEVMEPHLFVIRKQKRDSPDKVTPMLAYYVLDGSIYQAPQLCNVFAARIGRALYYIQKAFTTAASKLEKIGYADSENETALLESKTAKETIDIKEVKRVDHILASLQRKLPPAPPPPPFPEGYVPPPTAETEKGTETQEAAETQAPTADPIIDQGPAKRMKF*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
