Glyma08g21270 - SoyBase

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Report for Sequence Feature Glyma08g21270

Feature Type:	gene_model
Chromosome:	Gm08
Start:	16153656
stop:	16158281
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g21270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G35790	AT	Annotation by Michelle Graham. TAIR10: glucose-6-phosphate dehydrogenase 1 \| chr5:13956879-13959686 REVERSE LENGTH=576	SoyBase	E_val: 0	ISS
GO:0006006	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose metabolic process	SoyBase	N/A	ISS
GO:0009051	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt, oxidative branch	SoyBase	N/A	ISS
GO:0009637	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to blue light	SoyBase	N/A	ISS
GO:0010155	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of proton transport	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0004345	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glucose-6-phosphate dehydrogenase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0050661	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NADP binding	SoyBase	N/A	ISS
KOG0563	KOG	Glucose-6-phosphate 1-dehydrogenase	JGI		ISS
PTHR23429	Panther	GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE (G6PD)	JGI		ISS
PF00479	PFAM	Glucose-6-phosphate dehydrogenase, NAD binding domain	JGI		ISS
PF02781	PFAM	Glucose-6-phosphate dehydrogenase, C-terminal domain	JGI		ISS
UniRef100_B9SW52	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Ricinus communis RepID=B9SW52_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI00023390A4	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023390A4 related cluster n=1 Tax=unknown RepID=UPI00023390A4	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g21270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g21270

Paralog	Evidence	Comments
Glyma07g01630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g21270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g199000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g21270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g21270

Limit To All Plant Sequences

>Glyma08g21270.2   sequence type=CDS   gene model=Glyma08g21270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAGTATTCTGTGTCCTTCTTTAACCATAGTCACGTCCTATGCATCCAGGAATGAACCAAAACTTGTCTGTAAACTCACTGCAGTGACAGGAAACTCTCATTCACCACTATGGTTTTCTTGCACTCGCCCTGGAAACTCAGCTAGAAACCATTTTCTGCTCAAATCCTCAAATGGGCTTCCGCTAAATGCTGTTTCTTCTAATGATGGTTTAGCTGGAAGTTCAACAGCCAAAGAAGATGGCAAGCCCCAACCACTTGAAGGACCTTTTCCCTTTCCAGACTCAGAATGTACCGGATCCAACCTTAGTATAACTGTTGTTGGAGCTTCTGGAGACCTTGCTAAAAAGAAGATTTTTCCAGCACTCTTTGCTCTTTTTTATGAAGATTGGCTACCTAAGAATTTTCTTGTGTTTGGATTTGCTCGAACTAAAATGACCGATGAAGAATTAAGGAACATGATTAGCAAGACATTAACATGCAGAATTGATACGAGGGAAAATTGCCAAGATAAAATGGATCAGTTCTTAAAAAGATGCTTTTACCATTCTGGTCAATACAACTCCGAGGACCACTTTTCTGAATTGGGTAGCAAGCTGAGAGAGAAAGAGGGTGGAAAACTATCAAACAGATTGTTTTATTTGTCAATACCTCCAAACATATTTGTGGATGTGGTGAGATGCGCTAGTCTTAAAGCTTCTTCAAAAGATGGATGGACAAGGGTTATTGTTGAAAAGCCATTTGGTCGTGACTCTGAATCATCTAGTGAGCTAACAAAGAGTTTGAAGCAGCACCTCACTGAAGACCAAATATTCAGGATTGACCATTACTTGGGTAAGGAGCTCGTGGAGAATCTATCAGTGCTTCGCTTTTCAAATCTTGTTTTTGAGCCTCTATGGTCCCGGAATTACATTCGCAATGTGCAGATAATATTTTCTGAAGATTTTGGAACTGAAGGAAGAGGAGGTTATTTTGATCACTATGGAATCATTCGTCATATAATGCAAAATCATCTTCTGCAAATACTAGCATTGTTTGCAATGGAAACACCTGTCAGCTTGGCTGCTGAGGACATCAGAAATGAAAAGGTTAAGGTTCTGAGATCAATGAGACCACTCGAGCTTGAAAATGTTGTTGTTGGTCAATATAAGGGCCACAGCAAGGGTGGTAAATCACATCCTGCTTATACAGATGATCCAACTGTTCCAAAGGGTAGTCTTACTCCAACATTTGCAGCAGCAGCTCTTTTTATTGACAATGCCAGATGGGATGGGGTTCCTTTTCTTATGAAAGCTGGCAAGGCTCTCCATACTAAACGTGCAGAAATCAGAGTACAATTCAGACACGTCCCAGGTAACTTGTACAAGAGGAATTTTGGAACTGATCTGGACAAAGCTACAAATGAGCTTGTGCTTCGTGTACAACCCGACGAAGCTATATATTTGAAGATCAACAATAAAGTTCCTGGTCTTGGAATGAGACTAGACAGAAGTGACCTGAATTTGCTTTTCCGGGCAAGGTATCCAAGAGAAATACCAGATGCATATGAAAGGTTACTCTTAGATGCCATTGAAGGTGAGCGAAGGCTGTTCATTAGAAGCGATGAGCTAGATGCAGCTTGGGCACTATTCACTCCTTTGCTAAAAGAAATTGAAAACAAGAAGATTGCTCCAGAGCTCTACCCCTACGGTAGCAGAGGACCAGTTGGAGCACATTACCTTGCTGCAAGGCACAATGTAAGATGGGGAGATCTCGGAGAAGACTAA

Predicted protein sequences of Glyma08g21270

Limit To All Plant Sequences

>Glyma08g21270.2   sequence type=predicted peptide   gene model=Glyma08g21270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASILCPSLTIVTSYASRNEPKLVCKLTAVTGNSHSPLWFSCTRPGNSARNHFLLKSSNGLPLNAVSSNDGLAGSSTAKEDGKPQPLEGPFPFPDSECTGSNLSITVVGASGDLAKKKIFPALFALFYEDWLPKNFLVFGFARTKMTDEELRNMISKTLTCRIDTRENCQDKMDQFLKRCFYHSGQYNSEDHFSELGSKLREKEGGKLSNRLFYLSIPPNIFVDVVRCASLKASSKDGWTRVIVEKPFGRDSESSSELTKSLKQHLTEDQIFRIDHYLGKELVENLSVLRFSNLVFEPLWSRNYIRNVQIIFSEDFGTEGRGGYFDHYGIIRHIMQNHLLQILALFAMETPVSLAAEDIRNEKVKVLRSMRPLELENVVVGQYKGHSKGGKSHPAYTDDPTVPKGSLTPTFAAAALFIDNARWDGVPFLMKAGKALHTKRAEIRVQFRHVPGNLYKRNFGTDLDKATNELVLRVQPDEAIYLKINNKVPGLGMRLDRSDLNLLFRARYPREIPDAYERLLLDAIEGERRLFIRSDELDAAWALFTPLLKEIENKKIAPELYPYGSRGPVGAHYLAARHNVRWGDLGED*

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