SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research



Report for Sequence Feature Glyma08g21260

Feature Type:gene_model
Chromosome:Gm08
Start:16144688
stop:16147896
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G51800AT Annotation by Michelle Graham. TAIR10: Leucine-rich repeat protein kinase family protein | chr1:19214203-19217833 FORWARD LENGTH=894 SoyBaseE_val: 5.00E-159ISS
GO:0002679GO-bp Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response SoyBaseN/AISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0006569GO-bp Annotation by Michelle Graham. GO Biological Process: tryptophan catabolic process SoyBaseN/AISS
GO:0006857GO-bp Annotation by Michelle Graham. GO Biological Process: oligopeptide transport SoyBaseN/AISS
GO:0006865GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid transport SoyBaseN/AISS
GO:0009684GO-bp Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0015824GO-bp Annotation by Michelle Graham. GO Biological Process: proline transport SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF417Panther SUBFAMILY NOT NAMED JGI ISS
PF00560PFAM Leucine Rich Repeat JGI ISS
UniRef100_G7LGQ9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Kinase-like protein n=1 Tax=Medicago truncatula RepID=G7LGQ9_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1KUZ5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUZ5_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g21260.1   sequence type=CDS   gene model=Glyma08g21260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGGAATGTTATTGCAGTTTCTTTATGTATTGTTTGGGGTACTTATTTCTGTGGTTCTGGTTCAAGCACAGGATCAATCAGGATTCATTAGCATTGATTGTGGTCTACCTGAATCCTCAAGCTATACTGAGAAGACCACAAGCATATTTTACATTTCAGATGCCAAATTTATAGATGCTGGTGTAAGCAAGAGTATTTCACCAGCAGAGAAGAGTACTCATCTACAACAGCTAGCATATGTGAGGAGTTTTCCTAGTGGAGAGAGAAACTGTTACAGAATAAATGTAACCAGTGGTACTAAATATTTGATCAGAGCTACTTTCTTTTATGGAAACTATGATGGCCTCAATCAGCCACCACAATTTGATCTTCATCTTGGACCTAATTTATGGGACACAGTGAGCTTCCCCAATGCATCACTCAGCGAAATCAGTGAAATCATTTACACCCCATCACTAGATTACATACATCCATGTCTTGTTAACAAAGGTCAAGGGGCTCCATTCATTTCAACCATAGAATTGAGGACTTTGAAAAATGCTTCCTATGTCACAGCGTCAGCTGAATCATTGGCATACTATCGGCGATATGATTTAGGTTCCATCACCAACTTAGTATACAGGTACAACTATGATGTTTATGACCGCATCTGGGTGCCACATGGATTCAACCAGTGGACACAATTAAGCAGCACACTTAATCATGATATATTCCAGAATGATTACAAATTACCAGAAGTTGTCATGAGCACTGCTGCTACACCAATAAATGCTAGTGCTCCATTTCAGTTCTATTGGGATCCAGATAATGTGAATGAGAAATTCTACATCTACATGCACTTTAACGAGGTTAAAATTCTGGCAGAAAATGAAACTAGAACATTCAATATCTTCATGAATGGCAAGTTATTCTATGGACCTCTGACTCCTGGATATCTGACGAAAAATATCATATATAGTACATCAGCTTTGACCGGAGCTACAAGGTATCTATTTTCTCTTGCTAAGACAGGGACTTCTACCCTTCCACCCATCATGAATGCCATGGAGATTTATAAAGTAATAGATTTTGCTCAATCAGAAACTGAACAAGATGATGTTGATGCTATCACAAACATCAAAAACGCTTATGGGGTGGATAGAAATTGGCAAGGAGATCCATGTGGCCCAGTAGCATACATTTGGGAAGGTCTAAATTGTAGTTATGATAACACCCCAAGAATCACATCCTTGAATTTGTCTTCAAGTGGACTGACCGGACAGATATTATCTTTCATCTCCGAGCTCACTATGTTACAGTATTTGGATTTATCAAACAATAGTTTAAGCGGGTCAGTACCTGATTTTCTGACACAACTGCAATCACTTAAAGTCTTAAACTTGGCGAAAAACAACCTTACTGGTCCAGTTCCCGGAGGACTTGTTGAAAGATCAAAGCAAGGTTCACTATCATTGAGCCTGGATCAAAATCCAAATCTATGTGAATCTGATCCATGCATCCAGCAGACAAATAACAAGCAGCCAGATGGTGATCAACAGAAGAACAAAAATAATATAGTTATCCCGGTAGTAGCATCAGTTGCTGGGGTTTTGGTGCTCCTAATAATTGTAGCAGCAGCTATAATCTGTGGCCTTAAAAGGAAAAAACCACAAGGTAAAGCTGTTGCTAACTACCTTTTTTGGTTTGTTTCCATGTTCTGA

>Glyma08g21260.1   sequence type=predicted peptide   gene model=Glyma08g21260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMGMLLQFLYVLFGVLISVVLVQAQDQSGFISIDCGLPESSSYTEKTTSIFYISDAKFIDAGVSKSISPAEKSTHLQQLAYVRSFPSGERNCYRINVTSGTKYLIRATFFYGNYDGLNQPPQFDLHLGPNLWDTVSFPNASLSEISEIIYTPSLDYIHPCLVNKGQGAPFISTIELRTLKNASYVTASAESLAYYRRYDLGSITNLVYRYNYDVYDRIWVPHGFNQWTQLSSTLNHDIFQNDYKLPEVVMSTAATPINASAPFQFYWDPDNVNEKFYIYMHFNEVKILAENETRTFNIFMNGKLFYGPLTPGYLTKNIIYSTSALTGATRYLFSLAKTGTSTLPPIMNAMEIYKVIDFAQSETEQDDVDAITNIKNAYGVDRNWQGDPCGPVAYIWEGLNCSYDNTPRITSLNLSSSGLTGQILSFISELTMLQYLDLSNNSLSGSVPDFLTQLQSLKVLNLAKNNLTGPVPGGLVERSKQGSLSLSLDQNPNLCESDPCIQQTNNKQPDGDQQKNKNNIVIPVVASVAGVLVLLIIVAAAIICGLKRKKPQGKAVANYLFWFVSMF*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo