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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G35790 | AT | Annotation by Michelle Graham. TAIR10: glucose-6-phosphate dehydrogenase 1 | chr5:13956879-13959686 REVERSE LENGTH=576 | SoyBase | E_val: 4.00E-119 | ISS |
| GO:0006006 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucose metabolic process | SoyBase | N/A | ISS |
| GO:0009051 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt, oxidative branch | SoyBase | N/A | ISS |
| GO:0009637 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to blue light | SoyBase | N/A | ISS |
| GO:0010155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of proton transport | SoyBase | N/A | ISS |
| GO:0015979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthesis | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0046777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0004345 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glucose-6-phosphate dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0050661 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NADP binding | SoyBase | N/A | ISS |
| PTHR23429 | Panther | GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE (G6PD) | JGI | ISS | |
| PF00479 | PFAM | Glucose-6-phosphate dehydrogenase, NAD binding domain | JGI | ISS | |
| PF02781 | PFAM | Glucose-6-phosphate dehydrogenase, C-terminal domain | JGI | ISS | |
| UniRef100_I1KUZ1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glucose-6-phosphate 1-dehydrogenase (Fragment) n=1 Tax=Glycine max RepID=I1KUZ1_SOYBN | SoyBase | E_val: 9.00E-136 | ISS |
| UniRef100_UPI0002337CE1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337CE1 related cluster n=1 Tax=unknown RepID=UPI0002337CE1 | SoyBase | E_val: 9.00E-139 | ISS |
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Glyma08g21180 not represented in the dataset |
Glyma08g21180 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g198300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g21180.3 sequence type=transcript gene model=Glyma08g21180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTTGGGTCTGCATGGTTGTAATCTTTATGCAGAATTTTCTTGTGTTTGGATTTGCTCGAACTAAAATGACCGATGAAGAATTAAGGAACATGATTAGCAAGACATTACCATGCAGAATTGATACGAGGGAAAATTGCGAAAGATAAAATGGATCAGTTCTTAAAAAGATGCTTTTACCATTCTGGTCAATACAACTCCGAGGACCACTTTTCTGAATTGGGTAGCAAGCTGAGAGAGAAAGAGGGTGGAAAGCTATCAAACAGATTGTTTTATTTGTCAATACCTCCAAACATATTTGTGGATGTGGTGAGATGCGCTAGTCTTAAAGCTTCTTCAAAAGATGGATGGACAAGGGTTATTGTTGAAAAGCCATTTGGTCGTGACTCAGAATCATCTAGTGAGCTAACAAAGAGTTTGAAGCAGCACCTCACTGAAGACCAAATATTCAGGATTGACCATTACTTGGGTAAGGAGCTCGTGGAGAATCTGTCAGTGCTTCGCTTTTCAAATCTTGATTTTGAGCCTCTATGGTCCCGGAATTACATTCGCAATGTGCAGATAATATTTTCTGAAGATTTTGGAACTGAAGGAAGAGGAGGTGATTTTGATCACTATGGAATCATTCGTGATATAATGCAAAATCATCTTCTGCAAATACTAGCATTGTTTGCAATGGAAACACCAGTCAGCTTGGCTGCTGAGGACATCAGAAATGAAAAGGTTTAGGTTATGAGATCAATGAGACCACTCGAACTTGAAAATGTTGTTG
>Glyma08g21180.2 sequence type=CDS gene model=Glyma08g21180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCAGTTCTTAAAAAGATGCTTTTACCATTCTGGTCAATACAACTCCGAGGACCACTTTTCTGAATTGGGTAGCAAGCTGAGAGAGAAAGAGGGTGGAAAGCTATCAAACAGATTGTTTTATTTGTCAATACCTCCAAACATATTTGTGGATGTGGTGAGATGCGCTAGTCTTAAAGCTTCTTCAAAAGATGGATGGACAAGGGTTATTGTTGAAAAGCCATTTGGTCGTGACTCAGAATCATCTAGTGAGCTAACAAAGAGTTTGAAGCAGCACCTCACTGAAGACCAAATATTCAGGATTGACCATTACTTGGGTAAGGAGCTCGTGGAGAATCTGTCAGTGCTTCGCTTTTCAAATCTTGATTTTGAGCCTCTATGGTCCCGGAATTACATTCGCAATGTGCAGATAATATTTTCTGAAGATTTTGGAACTGAAGGAAGAGGAGGTGATTTTGATCACTATGGAATCATTCGTGATATAATGCAAAATCATCTTCTGCAAATACTAGCATTGTTTGCAATGGAAACACCAGTCAGCTTGGCTGCTGAGGACATCAGAAATGAAAAGATTTCAGCCAATATAATGATGTTCACTGATTAA >Glyma08g21180.3 sequence type=CDS gene model=Glyma08g21180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCAGTTCTTAAAAAGATGCTTTTACCATTCTGGTCAATACAACTCCGAGGACCACTTTTCTGAATTGGGTAGCAAGCTGAGAGAGAAAGAGGGTGGAAAGCTATCAAACAGATTGTTTTATTTGTCAATACCTCCAAACATATTTGTGGATGTGGTGAGATGCGCTAGTCTTAAAGCTTCTTCAAAAGATGGATGGACAAGGGTTATTGTTGAAAAGCCATTTGGTCGTGACTCAGAATCATCTAGTGAGCTAACAAAGAGTTTGAAGCAGCACCTCACTGAAGACCAAATATTCAGGATTGACCATTACTTGGGTAAGGAGCTCGTGGAGAATCTGTCAGTGCTTCGCTTTTCAAATCTTGATTTTGAGCCTCTATGGTCCCGGAATTACATTCGCAATGTGCAGATAATATTTTCTGAAGATTTTGGAACTGAAGGAAGAGGAGGTGATTTTGATCACTATGGAATCATTCGTGATATAATGCAAAATCATCTTCTGCAAATACTAGCATTGTTTGCAATGGAAACACCAGTCAGCTTGGCTGCTGAGGACATCAGAAATGAAAAGGTTTAG
>Glyma08g21180.2 sequence type=predicted peptide gene model=Glyma08g21180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDQFLKRCFYHSGQYNSEDHFSELGSKLREKEGGKLSNRLFYLSIPPNIFVDVVRCASLKASSKDGWTRVIVEKPFGRDSESSSELTKSLKQHLTEDQIFRIDHYLGKELVENLSVLRFSNLDFEPLWSRNYIRNVQIIFSEDFGTEGRGGDFDHYGIIRDIMQNHLLQILALFAMETPVSLAAEDIRNEKISANIMMFTD* >Glyma08g21180.3 sequence type=predicted peptide gene model=Glyma08g21180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDQFLKRCFYHSGQYNSEDHFSELGSKLREKEGGKLSNRLFYLSIPPNIFVDVVRCASLKASSKDGWTRVIVEKPFGRDSESSSELTKSLKQHLTEDQIFRIDHYLGKELVENLSVLRFSNLDFEPLWSRNYIRNVQIIFSEDFGTEGRGGDFDHYGIIRDIMQNHLLQILALFAMETPVSLAAEDIRNEKV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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