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Report for Sequence Feature Glyma08g21171

Feature Type:gene_model
Chromosome:Gm08
Start:16067243
stop:16074201
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g21171
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G29990AT Annotation by Michelle Graham. TAIR10: Leucine-rich repeat transmembrane protein kinase protein | chr4:14665802-14669438 REVERSE LENGTH=876 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PF07714PFAM Protein tyrosine kinase JGI ISS
UniRef100_G7IUL7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G7IUL7_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI0002337CE0UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337CE0 related cluster n=1 Tax=unknown RepID=UPI0002337CE0 SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g21171
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g21171 not represented in the dataset
Glyma08g21171 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g21171 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g198100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g21171
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g21171
>Glyma08g21171.1   sequence type=CDS   gene model=Glyma08g21171   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCTTACGAACACTTAACAAAGCACAAAAGGTGGTACAAGGACGATATCTATGATCGCAGGTGGTACTGGCGCGATGTTAAAGATTGGTATAAGATCAATACAACCATAGATGTTAATAAATCTGGCAATGATATTTATAAAGTACCAGCTGAAGTCTTGAAAACCGCAGTGCAGTCCTTCAATCGCTCATATGACTTGCACTATGACTTTGAAATTGAATGGAATCTTCAATTGAACAAGTATTCCGGATATTATGTCTACTTTCACTTTGCTGAAATTCAACAGCTTGCTCCAGGGCTCAGAAGGATAATCAACATCACTCTCAATGATGAAAACATACTCTCTGAGCCTATAACTCTCGAATATATGAAGCCTGTCACTATTAGTAACAAAAATGCAACTCAAGGTTTCGTTCGCTTTTCAATTAGAGCAACTGCAGAATCGGATGCTCCCCCAATTCTCAATGCTTTTGAGGTTTATAAATTAGTAACAGATCTAAATTCACCAACAGATATTAAAGATGTTGATGCCATCGTGAACATCAAACGCTACTATGGGATATCCAGAATAGATTGGCAAGGGGACCCATGTGTTCCAGAAATATTCAGATGGAGTGGCCTGGACTGCAGCTACGGCATCAATCCTAGAATCATATCATTGAACCTTAGCTCAAGCAAACTAGGAGGGCAGATAGCCGCTTCAGTCTCAGATCTTTCAGAACTACAGTCCCTGGATGTCTCAGATAACAGTTTAAATGGTTTTGTGCCCGAGTCATTATCTCAACTTGAGTACCTGAGGATTTTAAATATAGGAGGGAATAAGCTATCGGGGTCAATTCCTGCAAAACTAATTGAGAGATCAAAGAATGGGTCACTAATATTAAGTGTTGATGGAAATCAAAATCTTTGCACCTCGACTCCATGCCACAAGAGAAACAGGGTTGTAATTCCGTTGGTAGCAACACTTGCGGGAGCCTTCATCCTTTTGGCAGTATCATTATTTGTTTTTAGAAGAGTACAAGTTGTTGTGAGTATGAAGAAGTTGAAGTTTTCCAACAAAATGGAATATGTAGACTCGAAGAAACAAGAGTTCAGCTACTCAGAGGTTCAAATGATTACGAATAATTTTGAGAGGGTTGTGGGTAAAGGAGGATTTGGAACTGTCTACTATGGTTGCATAGGTGAAACACGAGTAGCCGTGAAGATGCTCTCTCATTCAACTCAAGGTGTTCGGCAATTTCAGACAGAGGCAAATATTCTCACAAGAGTACACCATAGATGCTTTACTCCACTTATTGGATATTGCAATGAAGGCACCAGAACAGCACTCATCTATGAATACATGACCAACGGAGACCTAGCTGAGAAGCTATCAGGTCAAAGTCAAACATTCTTAGGTTGGGAACAGAGATTTCAAATTGCTTTGGATTCTGCAATAGGCTTGGAGTACCTTCATTATGGTTGCAAGCCCCCAATTATTCACAGAGATGTTAAGACTAGAAATATTTTACTCGACAAGAATCTCCGCGCCAAAATATCTGATTTTGGATTGTCAAGAATCTTTTCAGATGATGGTGACACCCATGTATCAACAGCAATTGCAGGCACCCCAGGATACCTTGACCCAGAATACAACATAACAAACAGGTTGAATGAAAAAAGTGACGTGTATAGTTTTGGGATTGTTCTTCTAGAGATAATCACGGGGAGGACAGTCATACTAAAAACCCAGGTGAGAACTCACATAATCAAATGGGTAAGTTCCATGCTGGCTGATGATGGTGAAATTGATGGTGTTGTGGATACAAGGTTACAAGGAGAATATGACAGTGAGGCTGCAAGGAAAGTAATAGATGTTGCAATGGCCTGTGTTGCTCCGAGTTCTGTTAATAGGCCAACAATGAATCAAGTGGTCATGGAATTAAAACAATGTTTCCCCATGGGGAAACTTGGGACTACGTCCACTGGATCCAGTGAAATTTTCTCTGCGGGTGAAATTAGTGGACTTAGTTCTCTAGCCAGGTAA
Predicted protein sequences of Glyma08g21171
>Glyma08g21171.1   sequence type=predicted peptide   gene model=Glyma08g21171   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAYEHLTKHKRWYKDDIYDRRWYWRDVKDWYKINTTIDVNKSGNDIYKVPAEVLKTAVQSFNRSYDLHYDFEIEWNLQLNKYSGYYVYFHFAEIQQLAPGLRRIINITLNDENILSEPITLEYMKPVTISNKNATQGFVRFSIRATAESDAPPILNAFEVYKLVTDLNSPTDIKDVDAIVNIKRYYGISRIDWQGDPCVPEIFRWSGLDCSYGINPRIISLNLSSSKLGGQIAASVSDLSELQSLDVSDNSLNGFVPESLSQLEYLRILNIGGNKLSGSIPAKLIERSKNGSLILSVDGNQNLCTSTPCHKRNRVVIPLVATLAGAFILLAVSLFVFRRVQVVVSMKKLKFSNKMEYVDSKKQEFSYSEVQMITNNFERVVGKGGFGTVYYGCIGETRVAVKMLSHSTQGVRQFQTEANILTRVHHRCFTPLIGYCNEGTRTALIYEYMTNGDLAEKLSGQSQTFLGWEQRFQIALDSAIGLEYLHYGCKPPIIHRDVKTRNILLDKNLRAKISDFGLSRIFSDDGDTHVSTAIAGTPGYLDPEYNITNRLNEKSDVYSFGIVLLEIITGRTVILKTQVRTHIIKWVSSMLADDGEIDGVVDTRLQGEYDSEAARKVIDVAMACVAPSSVNRPTMNQVVMELKQCFPMGKLGTTSTGSSEIFSAGEISGLSSLAR*






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