Glyma08g21100 - SoyBase

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Report for Sequence Feature Glyma08g21100

Feature Type:	gene_model
Chromosome:	Gm08
Start:	16002708
stop:	16006529
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g21100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G11730	AT	Annotation by Michelle Graham. TAIR10: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein \| chr5:3780963-3782473 FORWARD LENGTH=386	SoyBase	E_val: 8.00E-170	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
PF02485	PFAM	Core-2/I-Branching enzyme	JGI		ISS
UniRef100_I1KUY5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUY5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q6AVG1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q6AVG1_ORYSJ	SoyBase	E_val: 6.00E-169	ISS

Expression Patterns of Glyma08g21100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g21100

Paralog	Evidence	Comments
Glyma07g01590	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g21100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g197400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g21100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g21100

Limit To All Plant Sequences

>Glyma08g21100.3   sequence type=transcript   gene model=Glyma08g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCAAACCCAAAGCGACAGCAGCAACCTAAACTCAGAAGACAACAGACAAAAATCTATAAAATGAAACTCAATCTCAGGTGTTTGTGAGATTTGATTATGTGTGAAGGAACACGAGTACCCAGAATCTAAGTTTGATTGATAGAGAGCAGAGGAAAAACCATGCAGTCTAGGTTGGAGGAAGGGAAGGACCCTGCTGGATTAAGGACTACTCCCTCTAGGCCCTTCCCTTTGAGACTTCTGCAGTTCTTCTTGGCCTTTTTGGTTATTGGCCTAGGTGCTTCGTTTCTTAGCATGTACATGATTAGACATTTTGGCATTCATAATGTGGCTTTGCTACAGTCTTCGTTTAAGCCTTGCTTTGAGCAGCCGGCAAACATAGAAAGTTGGACTATGCCTCGGTCCAATTTGCTGCATGCCATGAATGACACCGAACTCTTTTGGCGAGCTTCTTTTGTTCCAAGGATCAAGAGTTATCCTTTTAAAAGAACTCCCAAGATTGCCTTCATGTTCTTGACTAAGGGACCCTTGCCAATGGCACCACTCTGGGAGAAGTTCTTTAAAGGGCACGCAAGGCTTTATTCAATCTATGTTCATTTGCTGCCATCTTATAATGCTGATTTTCCACCATCATCAGTCTTTTACAGGAGACAGATCCCAAGCCAGGTGGCAGAGTGGGGAATGATGAGTATGTGTGATGCTGAAAGAAGACTTCTGGCTAATGCATTGCTTGATATCTCAAATGAATGGTTTATCCTCTTATCGGAGTCCTGCATTCCCCTCCAAAACTTCAGCATTGTGTACCGTTACATAGCACACTCAAGATATAGCTTTATGGGTGCAGTTGATGAACCTGGTCCTTATGGGAGAGGCCGGTATGATGGAAACATGGCACCTGAGATCAACGTGAGTGACTGGCGAAAGGGCTCTCAGTGGTTTGAAATTAAACGAGAACTAGCTCTTAGGATAGTTGAAGACAGAACTTACTATCCTAAGCTCAAAGAATTCTGCAGACCACACAAATGTTATGTTGATGAGCACTATTTTCAGACAATGTTAACAATTAATACTCCTCATCTTTTGGCAAATAGAAGCCTCACTTATGTGGACTGGTCAAGGGGTGGTGCTCACCCAGCTACCTTTGGGAAGGATGACATCAAAGAGGAATTCTTCAAGAAAATTTTGCAGGATCAGAAATGTCTTTATAATAACCAGCCATCTTCTCTTTGCTTCCTATTTGCAAGAAAGTTTGCACCTAATGCTTTGGGCCCTCTTTTAGACATAGCACCCAAAGCTCTAGGAATTGGAAAAAGGCCTGGCTTCTAAGCTGCATCATTGGAGGAGCACACATGGACGGGAGCATGTTAGTTAGCCATCTGTTAACTCCGTTTTAGTTGCATGATTCATCATCTAATCTCCCTGCTTTGCAGAAATTTTGAGTTGCTCCTCCAGCCTATAGATGTGTAGGGCATTGAATCTAAATCACATTTTATACAAGTATTAGCCAAAATATTGACTAATACTTTATTGGATTATTAGTTAAATAAATATTGTAGTCATCTTTTTGGAATATGTTTTTCCATTTACACAAGTTACTTTTCTGGCCATTAAAAAATGCACTAACGTATTATGTTGCGGCATCCAGTTTGTGGTTCTTTCAATTGGCAGTTTCCATCTCTGCTACTTGGTTTATCTTGCAACTAAGATGCCAAGGCCAGAGCTATGAAGTATACTCAGATGTCAGAATTATAGTTTGTTTCATCTTGGTAAAAATATTAGTAAAACTCTGTTTGGATACAAGACTAGAAGTGCTTTAGAGAACTTC

Coding sequences of Glyma08g21100

Limit To All Plant Sequences

>Glyma08g21100.2   sequence type=CDS   gene model=Glyma08g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGTCTAGGTTGGAGGAAGGGAAGGACCCTGCTGGATTAAGGACTACTCCCTCTAGGCCCTTCCCTTTGAGACTTCTGCAGTTCTTCTTGGCCTTTTTGGTTATTGGCCTAGGTGCTTCGTTTCTTAGCATGTACATGATTAGACATTTTGGCATTCATAATGTGGCTTTGCTACAGTCTTCGTTTAAGCCTTGCTTTGAGCAGCCGGCAAACATAGAAAGTTGGACTATGCCTCGGTCCAATTTGCTGCATGCCATGAATGACACCGAACTCTTTTGGCGAGCTTCTTTTGTTCCAAGGATCAAGAGTTATCCTTTTAAAAGAACTCCCAAGATTGCCTTCATGTTCTTGACTAAGGGACCCTTGCCAATGGCACCACTCTGGGAGAAGTTCTTTAAAGGGCACGCAAGGCTTTATTCAATCTATGTTCATTTGCTGCCATCTTATAATGCTGATTTTCCACCATCATCAGTCTTTTACAGGAGACAGATCCCAAGCCAGGTGGCAGAGTGGGGAATGATGAGTATGTGTGATGCTGAAAGAAGACTTCTGGCTAATGCATTGCTTGATATCTCAAATGAATGGTTTATCCTCTTATCGGAGTCCTGCATTCCCCTCCAAAACTTCAGCATTGTGTACCGTTACATAGCACACTCAAGATATAGCTTTATGGGTGCAGTTGATGAACCTGGTCCTTATGGGAGAGGCCGGTATGATGGAAACATGGCACCTGAGATCAACGTGAGTGACTGGCGAAAGGGCTCTCAGTGGTTTGAAATTAAACGAGAACTAGCTCTTAGGATAGTTGAAGACAGAACTTACTATCCTAAGCTCAAAGAATTCTGCAGACCACACAAATGTTATGTTGATGAGCACTATTTTCAGACAATGTTAACAATTAATACTCCTCATCTTTTGGCAAATAGAAGCCTCACTTATGTGGACTGGTCAAGGGGTGGTGCTCACCCAGCTACCTTTGGGAAGGATGACATCAAAGAGGAATTCTTCAAGAAAATTTTGCAGGATCAGAAATGTCTTTATAATAACCAGCCATCTTCTCTTTGCTTCCTATTTGCAAGAAAGTTTGCACCTAATGCTTTGGGCCCTCTTTTAGACATAGCACCCAAAGCTCTAGGAATTGGAAAAAGGCCTGGCTTCTAA

>Glyma08g21100.3   sequence type=CDS   gene model=Glyma08g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGTCTAGGTTGGAGGAAGGGAAGGACCCTGCTGGATTAAGGACTACTCCCTCTAGGCCCTTCCCTTTGAGACTTCTGCAGTTCTTCTTGGCCTTTTTGGTTATTGGCCTAGGTGCTTCGTTTCTTAGCATGTACATGATTAGACATTTTGGCATTCATAATGTGGCTTTGCTACAGTCTTCGTTTAAGCCTTGCTTTGAGCAGCCGGCAAACATAGAAAGTTGGACTATGCCTCGGTCCAATTTGCTGCATGCCATGAATGACACCGAACTCTTTTGGCGAGCTTCTTTTGTTCCAAGGATCAAGAGTTATCCTTTTAAAAGAACTCCCAAGATTGCCTTCATGTTCTTGACTAAGGGACCCTTGCCAATGGCACCACTCTGGGAGAAGTTCTTTAAAGGGCACGCAAGGCTTTATTCAATCTATGTTCATTTGCTGCCATCTTATAATGCTGATTTTCCACCATCATCAGTCTTTTACAGGAGACAGATCCCAAGCCAGGTGGCAGAGTGGGGAATGATGAGTATGTGTGATGCTGAAAGAAGACTTCTGGCTAATGCATTGCTTGATATCTCAAATGAATGGTTTATCCTCTTATCGGAGTCCTGCATTCCCCTCCAAAACTTCAGCATTGTGTACCGTTACATAGCACACTCAAGATATAGCTTTATGGGTGCAGTTGATGAACCTGGTCCTTATGGGAGAGGCCGGTATGATGGAAACATGGCACCTGAGATCAACGTGAGTGACTGGCGAAAGGGCTCTCAGTGGTTTGAAATTAAACGAGAACTAGCTCTTAGGATAGTTGAAGACAGAACTTACTATCCTAAGCTCAAAGAATTCTGCAGACCACACAAATGTTATGTTGATGAGCACTATTTTCAGACAATGTTAACAATTAATACTCCTCATCTTTTGGCAAATAGAAGCCTCACTTATGTGGACTGGTCAAGGGGTGGTGCTCACCCAGCTACCTTTGGGAAGGATGACATCAAAGAGGAATTCTTCAAGAAAATTTTGCAGGATCAGAAATGTCTTTATAATAACCAGCCATCTTCTCTTTGCTTCCTATTTGCAAGAAAGTTTGCACCTAATGCTTTGGGCCCTCTTTTAGACATAGCACCCAAAGCTCTAGGAATTGGAAAAAGGCCTGGCTTCTAA

Predicted protein sequences of Glyma08g21100

Limit To All Plant Sequences

>Glyma08g21100.2   sequence type=predicted peptide   gene model=Glyma08g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQSRLEEGKDPAGLRTTPSRPFPLRLLQFFLAFLVIGLGASFLSMYMIRHFGIHNVALLQSSFKPCFEQPANIESWTMPRSNLLHAMNDTELFWRASFVPRIKSYPFKRTPKIAFMFLTKGPLPMAPLWEKFFKGHARLYSIYVHLLPSYNADFPPSSVFYRRQIPSQVAEWGMMSMCDAERRLLANALLDISNEWFILLSESCIPLQNFSIVYRYIAHSRYSFMGAVDEPGPYGRGRYDGNMAPEINVSDWRKGSQWFEIKRELALRIVEDRTYYPKLKEFCRPHKCYVDEHYFQTMLTINTPHLLANRSLTYVDWSRGGAHPATFGKDDIKEEFFKKILQDQKCLYNNQPSSLCFLFARKFAPNALGPLLDIAPKALGIGKRPGF*

>Glyma08g21100.3   sequence type=predicted peptide   gene model=Glyma08g21100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQSRLEEGKDPAGLRTTPSRPFPLRLLQFFLAFLVIGLGASFLSMYMIRHFGIHNVALLQSSFKPCFEQPANIESWTMPRSNLLHAMNDTELFWRASFVPRIKSYPFKRTPKIAFMFLTKGPLPMAPLWEKFFKGHARLYSIYVHLLPSYNADFPPSSVFYRRQIPSQVAEWGMMSMCDAERRLLANALLDISNEWFILLSESCIPLQNFSIVYRYIAHSRYSFMGAVDEPGPYGRGRYDGNMAPEINVSDWRKGSQWFEIKRELALRIVEDRTYYPKLKEFCRPHKCYVDEHYFQTMLTINTPHLLANRSLTYVDWSRGGAHPATFGKDDIKEEFFKKILQDQKCLYNNQPSSLCFLFARKFAPNALGPLLDIAPKALGIGKRPGF*

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