SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G51760 | AT | Annotation by Michelle Graham. TAIR10: peptidase M20/M25/M40 family protein | chr1:19199562-19201424 FORWARD LENGTH=440 | SoyBase | E_val: 5.00E-71 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0008237 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metallopeptidase activity | SoyBase | N/A | ISS |
| GO:0010179 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: IAA-Ala conjugate hydrolase activity | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| UniRef100_Q0GXX7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Auxin conjugate hydrolase n=1 Tax=Medicago truncatula RepID=Q0GXX7_MEDTR | SoyBase | E_val: 9.00E-78 | ISS |
| UniRef100_UPI0002337CDA | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337CDA related cluster n=1 Tax=unknown RepID=UPI0002337CDA | SoyBase | E_val: 9.00E-131 | ISS |
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Glyma08g21065 not represented in the dataset |
Glyma08g21065 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g197200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g21065.1 sequence type=CDS gene model=Glyma08g21065 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGCTACCAATGGCATTATTAGCTTACAAAACCTTGTTTCTCGCAAGGCTGGTCCTCTTGACCCCCAGGTTTTGACAGTTGCAAAGCTCCAAGGAGGTGCTGCATTCGATGTTATTCCAGATTATGTCATAATTGGTGGCACCTTCCGAGCTCTTTCTAGAGAAGCATTGAAGCACCTTAAACAGCGCATTGAGCAGGTTATCATTGGTCAAGCAGCTGTGCTGAGGTGCAATGCAAGTGTCAATTTCCTTGATGAAGAGAAACCTTTATATCCTCCAACTATAAAGAATGATGACTTGCACAAGGTTTTTGTTGATGTAGCTGGGAATTTGATTGGTATTTATAATGTTAACATTGATATGCAAACAGACATGGCAGCTGAAGACTTTGCATTCTATCAAGAGGCCATACCTGGCTATTACTTCACGCTTGGAATGAAGAATGCTTCTTCAATTGAAACGGTTGCGCCATTACACTCACCCTATCTTGTAATCAATGAAGATGGACTTCCCTATGGGGCTGCACTTCATGCATCATTGGCCACTGATTATCTTACAAAATATAAACAGGACGTAGCCAGGGTAGTCGGGAAATATCATGGTCAACTATGA
>Glyma08g21065.1 sequence type=predicted peptide gene model=Glyma08g21065 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAATNGIISLQNLVSRKAGPLDPQVLTVAKLQGGAAFDVIPDYVIIGGTFRALSREALKHLKQRIEQVIIGQAAVLRCNASVNFLDEEKPLYPPTIKNDDLHKVFVDVAGNLIGIYNVNIDMQTDMAAEDFAFYQEAIPGYYFTLGMKNASSIETVAPLHSPYLVINEDGLPYGAALHASLATDYLTKYKQDVARVVGKYHGQL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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