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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G51720 | AT | Annotation by Michelle Graham. TAIR10: Amino acid dehydrogenase family protein | chr1:19181741-19186297 FORWARD LENGTH=637 | SoyBase | E_val: 0 | ISS |
| GO:0006520 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process | SoyBase | N/A | ISS |
| GO:0008295 | GO-bp | Annotation by Michelle Graham. GO Biological Process: spermidine biosynthetic process | SoyBase | N/A | ISS |
| GO:0010413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process | SoyBase | N/A | ISS |
| GO:0045492 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| KOG2250 | KOG | Glutamate/leucine/phenylalanine/valine dehydrogenases | JGI | ISS | |
| PTHR11606 | Panther | GLUTAMATE DEHYDROGENASE | JGI | ISS | |
| PTHR11606:SF4 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00208 | PFAM | Glutamate/Leucine/Phenylalanine/Valine dehydrogenase | JGI | ISS | |
| PF02812 | PFAM | Glu/Leu/Phe/Val dehydrogenase, dimerisation domain | JGI | ISS | |
| UniRef100_B9RQ63 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glutamate dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9RQ63_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KUX4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUX4_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma08g20930 not represented in the dataset |
Glyma08g20930 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g01510 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g196200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g20930.2 sequence type=transcript gene model=Glyma08g20930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTTGCGTTATGCACATTTGATGGATGATGATGATGATATACACAGAATCCACATCACATCACATAACATAACATCACCATCACATACATGATGATACGTTCATCCTCGTCACTCTTCACTCCCCCCACTTTCTTCGATTTCTGAAATACCTAACAAAACAAACAGTCCCAGAAACAATCATTAAACTCCCAAACTTCGTTTTATTCCCACTCACCACTCACTCTCTAACCTCAATTTTTTCAAATTAAAGTTTCCTCCTTTCACTGCTCCAATCTCCCCCTCTTTGATCTCTCACTTCAACCACGAGATGCTCAAAACTTCCGCTTTTCAAGTTTGCCACTTTCGTTCGAATTCTCGAGAAAGCAAAGTATTTTAAATTTGTGGAGAGGCTTGTAATGCTGAATGTTGTTGCCAACCAGTGGAGTAGGGATGAATTCTGCAATGGATGATATGAATTTGATTCAGCAAACCCAGAGGCATCACTTGGTTGTGAGGGAGATTGGCGAGGAGATTGATTTAGAAATAGGAGCTGGGGAGGATGACCCGTCATTTGGTAACGCTACTCTGATTGGTGCACCAATGCGGGAATCTTCTGTAGAAGAACATGGAGAGAGCAAGCAGACGGGGATGATTTCTCAGCTTCCTAATGATGCTCAAGATATGTCCAAGACCCAACAGGGGAAAAGGAGGAAAAAGGTTGTTAAAAGATGGAGAGAAGAATGGGCAGACACCTATAAATGGGCTTATGTTGATATGAAGGATGGGACACCAAGGATTTTCTGCTCTGTCTGCAGGGAGTACGGCCGGAAGCATAGAAGAAATCCTTATGGGAATGAGGGCAGTCGTAATATGCAGATGAGTGCCCTGGAAGAACACAACAACAGTTTGCTTCACAAAGAGGCTCTTCGTCTTCAAATGGCCTCTAAAGATAAAATTGTGGTCGACAAGCCTGTTTATGTAAAAGCAGGATCAATTCTTGAAGCTACGCTAAAAAGGGATCCTCATGAGGTTGAATTCATTCAGGCAGTCCAAGAAGCAGTTCAAGCCCTTGAAAGAGTCATAGCAAAAAATTCTCGTTATATTAACATCATGGAGCGCTTATTGGAACCTGAACGAATGATTGTTTTTCGAGTTTCATGGGTGGATGATAGGGGTGAGACATGTGTGAATCGGGGCTTTAGGGTACAGTTTAACCAGTCAATGGGTCCATGTAGGGGTGGTATTCGTTTTCATCCATCAATGAATTTAAGTGTTGCCAAGTTCCTTGGTTTTGAACAGACTTTAAAGAATGCCTTATCACCATATAAATTAGGAGGAGCAGCTGGTGGAAGTGATTTTGATCCAAAAGGAAAAAGTGACAATGAGATTATGCGATTTTGCCAAAGTTTCATGAGTGAAATGTATCGCTACCTGGGGCCTGACAAGGACCTTCCGTCAGAGGAAATGGGTGTTGGTACTCGGGAAATGGGATATCTTTTTGGACAGTATAGGCGTCTCGCAGGTCATTTTCAGGGAAGTTTTACAGGGCCAAGGATATTTTGGTCTGGCTCCAGTCTTCGACCTGAAGCCACTGGCTATGGGCTGGTTTTCTTTGCCCAGCTCATGCTTGCTGACATGAATAAAGAACTTAAAGGATTAAGATGTGTTGTGAGTGGTTCTGGGAAGATCGCAATGCATGTCTTGGAGAAGCTAATTGCTTATGGTGCTCTTCCCATTTCAGTATCAGATTCTAGAGGATATTTGGTTGATGAGGATGGATTTGACTACATGAAAATATCATTTTTGCGAGACATCAAAGCTCAACAAAGAAGTTTACGAGACTATTCAAAGACCTATGCTCGGTCCAAATATTATGATGAAGCAAAACCTTGGAGTGAAAGGTGTGATGTTGCATTTGCCTGTGCTTCACAGAATGAAATTGATCAATCTGATGCCATTAATTTGGTTAATTCTGGTTGCCGTATACTAGTAGAAGGTTCAAACATGCCTTGTACCCCTGAGGCAGTTCAGATTCTGAGGAAAGCTAGTGTTCTCATTGCTCCTGCAATGGCTGCCGGTGCTGGAGGGGTTGTGGCTGGAGAACTTGAACTGAATCATGAATGCAGTTTGATGCACTGGTCACCAGAGGACTTTGAATCTAAATTGCAGGAAGCAATGAAGCAGACTTATCAGAGAGCTATGAAAGCTGCAACTGATTTTGGTTATCAAAAAGAAAGCCCTGAGGCTCTGGTACATGGAGCAGTCATCTCTGCCTTTCTAACCATTGCTCAAGCCATGACTGATCAAGGCTCTATATAGGGGTTCATATCGCAAAGTTTTGAATGCATCCAAATACTGATGTTAACCAATTAGCACTATGGTTGGAAATCTGCATTCACTGAATAGTCCAGATCATTGTTGATGCTGCAGTGGAAATTGTCAATGATAGGATGACACACTATTGCCAAAGCATATTTCCTTGTAAAATATGTAAAAAAAAAAATAGACTTAGAAAAGAAAAATATTTGGAGGACAAATTTTAGTTTCACAACAGAATAGGCATCCTTTAGTATTGCCAAGAAAAAGGAGAAATTGTCCTTGGCTTATTAACCCTGCTTGATGCCTGTTCCAAACTGAAGAAATATTTGAATATTCAGATTTGAAATAAAAGGTTAGTGTTCAATTTGAATATTATGCTTATTGTTTAGAAGT
>Glyma08g20930.1 sequence type=CDS gene model=Glyma08g20930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGTTGCCAACCAGTGGAGTAGGGATGAATTCTGCAATGGATGATATGAATTTGATTCAGCAAACCCAGAGGCATCACTTGGTTGTGAGGGAGATTGGCGAGGAGATTGATTTAGAAATAGGAGCTGGGGAGGATGACCCGTCATTTGGTAACGCTACTCTGATTGGTGCACCAATGCGGGAATCTTCTGTAGAAGAACATGGAGAGAGCAAGCAGACGGGGATGATTTCTCAGCTTCCTAATGATGCTCAAGATATGTCCAAGACCCAACAGGGGAAAAGGAGGAAAAAGGTTGTTAAAAGATGGAGAGAAGAATGGGCAGACACCTATAAATGGGCTTATGTTGATATGAAGGATGGGACACCAAGGATTTTCTGCTCTGTCTGCAGGGAGTACGGCCGGAAGCATAGAAGAAATCCTTATGGGAATGAGGGCAGTCGTAATATGCAGATGAGTGCCCTGGAAGAACACAACAACAGTTTGCTTCACAAAGAGGCTCTTCGTCTTCAAATGGCCTCTAAAGATAAAATTGTGGTCGACAAGCCTGTTTATGTAAAAGTTGCCATGTCAAAAACAGCAGGATCAATTCTTGAAGCTACGCTAAAAAGGGATCCTCATGAGGTTGAATTCATTCAGGCAGTCCAAGAAGCAGTTCAAGCCCTTGAAAGAGTCATAGCAAAAAATTCTCGTTATATTAACATCATGGAGCGCTTATTGGAACCTGAACGAATGATTGTTTTTCGAGTTTCATGGGTGGATGATAGGGGTGAGACATGTGTGAATCGGGGCTTTAGGGTACAGTTTAACCAGTCAATGGGTCCATGTAGGGGTGGTATTCGTTTTCATCCATCAATGAATTTAAGTGTTGCCAAGTTCCTTGGTTTTGAACAGACTTTAAAGAATGCCTTATCACCATATAAATTAGGAGGAGCAGCTGGTGGAAGTGATTTTGATCCAAAAGGAAAAAGTGACAATGAGATTATGCGATTTTGCCAAAGTTTCATGAGTGAAATGTATCGCTACCTGGGGCCTGACAAGGACCTTCCGTCAGAGGAAATGGGTGTTGGTACTCGGGAAATGGGATATCTTTTTGGACAGTATAGGCGTCTCGCAGGTCATTTTCAGGGAAGTTTTACAGGGCCAAGGATATTTTGGTCTGGCTCCAGTCTTCGACCTGAAGCCACTGGCTATGGGCTGGTTTTCTTTGCCCAGCTCATGCTTGCTGACATGAATAAAGAACTTAAAGGATTAAGATGTGTTGTGAGTGGTTCTGGGAAGATCGCAATGCATGTCTTGGAGAAGCTAATTGCTTATGGTGCTCTTCCCATTTCAGTATCAGATTCTAGAGGATATTTGGTTGATGAGGATGGATTTGACTACATGAAAATATCATTTTTGCGAGACATCAAAGCTCAACAAAGAAGTTTACGAGACTATTCAAAGACCTATGCTCGGTCCAAATATTATGATGAAGCAAAACCTTGGAGTGAAAGGTGTGATGTTGCATTTGCCTGTGCTTCACAGAATGAAATTGATCAATCTGATGCCATTAATTTGGTTAATTCTGGTTGCCGTATACTAGTAGAAGGTTCAAACATGCCTTGTACCCCTGAGGCAGTTCAGATTCTGAGGAAAGCTAGTGTTCTCATTGCTCCTGCAATGGCTGCCGGTGCTGGAGGGGTTGTGGCTGGAGAACTTGAACTGAATCATGAATGCAGTTTGATGCACTGGTCACCAGAGGACTTTGAATCTAAATTGCAGGAAGCAATGAAGCAGACTTATCAGAGAGCTATGAAAGCTGCAACTGATTTTGGTTATCAAAAAGAAAGCCCTGAGGCTCTGGTACATGGAGCAGTCATCTCTGCCTTTCTAACCATTGCTCAAGCCATGACTGATCAAGGCTCTATATAG >Glyma08g20930.2 sequence type=CDS gene model=Glyma08g20930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGTTGCCAACCAGTGGAGTAGGGATGAATTCTGCAATGGATGATATGAATTTGATTCAGCAAACCCAGAGGCATCACTTGGTTGTGAGGGAGATTGGCGAGGAGATTGATTTAGAAATAGGAGCTGGGGAGGATGACCCGTCATTTGGTAACGCTACTCTGATTGGTGCACCAATGCGGGAATCTTCTGTAGAAGAACATGGAGAGAGCAAGCAGACGGGGATGATTTCTCAGCTTCCTAATGATGCTCAAGATATGTCCAAGACCCAACAGGGGAAAAGGAGGAAAAAGGTTGTTAAAAGATGGAGAGAAGAATGGGCAGACACCTATAAATGGGCTTATGTTGATATGAAGGATGGGACACCAAGGATTTTCTGCTCTGTCTGCAGGGAGTACGGCCGGAAGCATAGAAGAAATCCTTATGGGAATGAGGGCAGTCGTAATATGCAGATGAGTGCCCTGGAAGAACACAACAACAGTTTGCTTCACAAAGAGGCTCTTCGTCTTCAAATGGCCTCTAAAGATAAAATTGTGGTCGACAAGCCTGTTTATGTAAAAGCAGGATCAATTCTTGAAGCTACGCTAAAAAGGGATCCTCATGAGGTTGAATTCATTCAGGCAGTCCAAGAAGCAGTTCAAGCCCTTGAAAGAGTCATAGCAAAAAATTCTCGTTATATTAACATCATGGAGCGCTTATTGGAACCTGAACGAATGATTGTTTTTCGAGTTTCATGGGTGGATGATAGGGGTGAGACATGTGTGAATCGGGGCTTTAGGGTACAGTTTAACCAGTCAATGGGTCCATGTAGGGGTGGTATTCGTTTTCATCCATCAATGAATTTAAGTGTTGCCAAGTTCCTTGGTTTTGAACAGACTTTAAAGAATGCCTTATCACCATATAAATTAGGAGGAGCAGCTGGTGGAAGTGATTTTGATCCAAAAGGAAAAAGTGACAATGAGATTATGCGATTTTGCCAAAGTTTCATGAGTGAAATGTATCGCTACCTGGGGCCTGACAAGGACCTTCCGTCAGAGGAAATGGGTGTTGGTACTCGGGAAATGGGATATCTTTTTGGACAGTATAGGCGTCTCGCAGGTCATTTTCAGGGAAGTTTTACAGGGCCAAGGATATTTTGGTCTGGCTCCAGTCTTCGACCTGAAGCCACTGGCTATGGGCTGGTTTTCTTTGCCCAGCTCATGCTTGCTGACATGAATAAAGAACTTAAAGGATTAAGATGTGTTGTGAGTGGTTCTGGGAAGATCGCAATGCATGTCTTGGAGAAGCTAATTGCTTATGGTGCTCTTCCCATTTCAGTATCAGATTCTAGAGGATATTTGGTTGATGAGGATGGATTTGACTACATGAAAATATCATTTTTGCGAGACATCAAAGCTCAACAAAGAAGTTTACGAGACTATTCAAAGACCTATGCTCGGTCCAAATATTATGATGAAGCAAAACCTTGGAGTGAAAGGTGTGATGTTGCATTTGCCTGTGCTTCACAGAATGAAATTGATCAATCTGATGCCATTAATTTGGTTAATTCTGGTTGCCGTATACTAGTAGAAGGTTCAAACATGCCTTGTACCCCTGAGGCAGTTCAGATTCTGAGGAAAGCTAGTGTTCTCATTGCTCCTGCAATGGCTGCCGGTGCTGGAGGGGTTGTGGCTGGAGAACTTGAACTGAATCATGAATGCAGTTTGATGCACTGGTCACCAGAGGACTTTGAATCTAAATTGCAGGAAGCAATGAAGCAGACTTATCAGAGAGCTATGAAAGCTGCAACTGATTTTGGTTATCAAAAAGAAAGCCCTGAGGCTCTGGTACATGGAGCAGTCATCTCTGCCTTTCTAACCATTGCTCAAGCCATGACTGATCAAGGCTCTATATAG
>Glyma08g20930.1 sequence type=predicted peptide gene model=Glyma08g20930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLLPTSGVGMNSAMDDMNLIQQTQRHHLVVREIGEEIDLEIGAGEDDPSFGNATLIGAPMRESSVEEHGESKQTGMISQLPNDAQDMSKTQQGKRRKKVVKRWREEWADTYKWAYVDMKDGTPRIFCSVCREYGRKHRRNPYGNEGSRNMQMSALEEHNNSLLHKEALRLQMASKDKIVVDKPVYVKVAMSKTAGSILEATLKRDPHEVEFIQAVQEAVQALERVIAKNSRYINIMERLLEPERMIVFRVSWVDDRGETCVNRGFRVQFNQSMGPCRGGIRFHPSMNLSVAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMSEMYRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRPEATGYGLVFFAQLMLADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGALPISVSDSRGYLVDEDGFDYMKISFLRDIKAQQRSLRDYSKTYARSKYYDEAKPWSERCDVAFACASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVQILRKASVLIAPAMAAGAGGVVAGELELNHECSLMHWSPEDFESKLQEAMKQTYQRAMKAATDFGYQKESPEALVHGAVISAFLTIAQAMTDQGSI* >Glyma08g20930.2 sequence type=predicted peptide gene model=Glyma08g20930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLLPTSGVGMNSAMDDMNLIQQTQRHHLVVREIGEEIDLEIGAGEDDPSFGNATLIGAPMRESSVEEHGESKQTGMISQLPNDAQDMSKTQQGKRRKKVVKRWREEWADTYKWAYVDMKDGTPRIFCSVCREYGRKHRRNPYGNEGSRNMQMSALEEHNNSLLHKEALRLQMASKDKIVVDKPVYVKAGSILEATLKRDPHEVEFIQAVQEAVQALERVIAKNSRYINIMERLLEPERMIVFRVSWVDDRGETCVNRGFRVQFNQSMGPCRGGIRFHPSMNLSVAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMSEMYRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRPEATGYGLVFFAQLMLADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGALPISVSDSRGYLVDEDGFDYMKISFLRDIKAQQRSLRDYSKTYARSKYYDEAKPWSERCDVAFACASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVQILRKASVLIAPAMAAGAGGVVAGELELNHECSLMHWSPEDFESKLQEAMKQTYQRAMKAATDFGYQKESPEALVHGAVISAFLTIAQAMTDQGSI*
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