Glyma08g20875 - SoyBase

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Report for Sequence Feature Glyma08g20875

Feature Type:	gene_model
Chromosome:	Gm08
Start:	15842556
stop:	15845220
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g20875

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G55030	AT	Annotation by Michelle Graham. TAIR10: RNI-like superfamily protein \| chr1:20530417-20531768 REVERSE LENGTH=422	SoyBase	E_val: 1.00E-12	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_G8A2T3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box/LRR-repeat protein n=1 Tax=Medicago truncatula RepID=G8A2T3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KUW9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUW9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g20875

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g20875 not represented in the dataset	Glyma08g20875 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g20875 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g195600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g20875

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g20875

Limit To All Plant Sequences

>Glyma08g20875.2   sequence type=transcript   gene model=Glyma08g20875   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAGGATCCATTGTCATTCTTAATTATAGCATACACTTTTTTGTGTTGCTTGCAGCACGCCACTTTGTTTGCTTGTTAACGAGAGAATGGATCGTGTGGGTCGATGAACCTCTAACCCTAACTTTCAGTTGCCTTCAGGCAAACTTTGGAGTTAAGAAATGGAGAGGGACATGATATCGACTTTGCCGAAAACAATACTTCATGACATTCTGTCAAGGATGCCAGAGGAAGATGCTGTTAGGACAAGTGTTTTGTCCAAATCTTGGGCGGAAACGTGGTCCACGTATCCCATCTTGTATTTTTCTGATACTATGATCGTGGGGACGTTTCCGCGGCCGTGGGAGGATTTTTTGAGGAAAAGAAAGAACTTCATTGATCATGTAAAGAGAACATTGCTAAGGTTCCATACCCAGGGCTTAGCAATCAAACAATTTAGGCTTATTATCAATTTTGACCTTCAGTACATGTCCCTGGATGTAGATCATTGGTTGAAGTTGGCTAGTGAAAGTGGTGTTCAGGTACTGGAAATTTGCCTGCCTAAAGGCCATGAACAGGATGAGAAAGCTCTGGACCCATGCTACATCTTGCCAACGGGTATCATTGAAGCCAAATCACTTTATAAGTTAGTGTTGATGGGGGGAATCAGAGTTGATCAAGCATTCCTGAGTCATTCAGTCAAGTTTTTCTCATTGCGAGTATTGTCATTGTGGAGTGTACTTTTGGAAGATGAACAAGCGATTGAGCATCTCATTTCTTGTTGTCCTTTGATTGAAGATGTAACTTTGAAGTGTTGTTCTGTATTGAACAATGGTGGCATAGGAGGTCTACTTGAGCCCAGGACCTCTAGGATGCAATCTATAAGTATGAATGCTCTGCCAAAGCTCAAGAAAGTTGATGTTCAAGGGATACCGGAGATTATTATCATTGATGCTCCAAGTCTAGAGTATTTCTGTTTTTGTCCTGGTGGAGATGTGCATTCACCTTTTAAGATGAATTTTGACAAGTGCAGAAATTTGAGAGTGTTATACTTATGGTCATTGAAGAGCACTACTATCACAGACAAGTGGTTTCTTGATCTATTTACTAAATTTCCCTTCCTTGAGTGTTTGAAATTTGTCAATTGCACAATGTCTGAGACGATTAATATTTCAAGTGCTCAACTCAAGGTCTTAGAGTTATCAAATTGCTCCAAATTGAAGGAGCTCAACCTGGATGCTCCAAATTTATTGTCATGTGGATATTGTGGTGATGGTGCCTCAAAACCTATAATATCTTTTCTGAAAAGCTCTAGTCAACTGGAAGTCAATGCTCAGATCGACATTGATTTTATGGATCTTCATTACTTGAGGGAATGCATCCAAAACTTCAAACCTCAAAATGTTTTGGCTTCACTATCCCTATTTATCCACCAGCCAATTGTCGATGAGTTGAACTTAGAGATCTTGCCAGTTTCATCCTCTCCACCAAGCATCAAACATTTGGACCTGCGTGCTGTTCCAAAAAATGAAACTTTGTATCTGCCTCTTGTCAATAGTGTACTTTCCAGTTGCTGCCCTGCAACTATTTCGTTGAGCTTGAATTCTTTTTTCTGCAGCAGAGCATTCATTGAGTTTTTCTACGAGATGCTAACAGGAAGAAAAGAGGATGAGTGTTTTTGCAGTTCTGGTCATATTAAGTGCTGGTGGCATGGCTTGAAGGATGTGAAAGTCTCAAGCACTAGGAAGGCTGATGAGAATATTGATTTTAAGACCATGTTAGATGCCTTGCCGACTTTTTCCCATCATGACAATATTATCTTTAGGTTAGAGTTGTAATATTAATTGTTGTCATCTACTAATAGACTGCATACATACAAGTTTGATGTTGCTACAGAATAAGGAGAATATCCTTCTTGTTCTACCTTTTTAGGTATTACATACAATCTGAAAAAAGGAACTTTAGCCGGTACTTTTTTGCTAATTAAAATACACTAATAAAATACACTTTATTAAATCATCTTTGC

Coding sequences of Glyma08g20875

Limit To All Plant Sequences

>Glyma08g20875.1   sequence type=CDS   gene model=Glyma08g20875   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGGGACATGATATCGACTTTGCCGAAAACAATACTTCATGACATTCTGTCAAGGATGCCAGAGGAAGATGCTGTTAGGACAAGTGTTTTGTCCAAATCTTGGGCGGAAACGTGGTCCACGTATCCCATCTTGTATTTTTCTGATACTATGATCGTGGGGACGTTTCCGCGGCCGTGGGAGGATTTTTTGAGGAAAAGAAAGAACTTCATTGATCATGTAAAGAGAACATTGCTAAGGTTCCATACCCAGGGCTTAGCAATCAAACAATTTAGGCTTATTATCAATTTTGACCTTCAGTACATGTCCCTGGATGTAGATCATTGGTTGAAGTTGGCTAGTGAAAGTGGTGTTCAGGTACTGGAAATTTGCCTGCCTAAAGGCCATGAACAGGATGAGAAAGCTCTGGACCCATGCTACATCTTGCCAACGGGTATCATTGAAGCCAAATCACTTTATAAGTTAGTGTTGATGGGGGGAATCAGAGTTGATCAAGCATTCCTGAGTCATTCAGTCAAGTTTTTCTCATTGCGAGTATTGTCATTGTGGAGTGTACTTTTGGAAGATGAACAAGCGATTGAGCATCTCATTTCTTGTTGTCCTTTGATTGAAGATGTAACTTTGAAGTGTTGTTCTGTATTGAACAATGGTGGCATAGGAGGTCTACTTGAGCCCAGGACCTCTAGGATGCAATCTATAAGTATGAATGCTCTGCCAAAGCTCAAGAAAGTTGATGTTCAAGGGATACCGGAGATTATTATCATTGATGCTCCAAGTCTAGAGTATTTCTGTTTTTGTCCTGGTGGAGATGTGCATTCACCTTTTAAGATGAATTTTGACAAGTGCAGAAATTTGAGAGTGTTATACTTATGGTCATTGAAGAGCACTACTATCACAGACAAGTGGTTTCTTGATCTATTTACTAAATTTCCCTTCCTTGAGTGTTTGAAATTTGTCAATTGCACAATGTCTGAGACGATTAATATTTCAAGTGCTCAACTCAAGGTCTTAGAGTTATCAAATTGCTCCAAATTGAAGGAGCTCAACCTGGATGCTCCAAATTTATTGTCATGTGGATATTGTGGTGATGGTGCCTCAAAACCTATAATATCTTTTCTGAAAAGCTCTAGTCAACTGGAAGTCAATGCTCAGATCGACATTGATTTTATGGATCTTCATTACTTGAGGGAATGCATCCAAAACTTCAAACCTCAAAATGTTTTGGCTTCACTATCCCTATTTATCCACCAGCCAATTGTCGATGAGTTGAACTTAGAGATCTTGCCAGTTTCATCCTCTCCACCAAGCATCAAACATTTGGACCTGCGTGCTGTTCCAAAAAATGAAACTTTGTATCTGCCTCTTGTCAATAGTGTACTTTCCAGTTGCTGCCCTGCAACTATTTCGTTGAGCTTGAATTCTTTTTTCTGCAGCAGAGCATTCATTGAGTTTTTCTACGAGATGCTAACAGGAAGAAAAGAGGATGAGTGTTTTTGCAGTTCTGGTCATATTAAGTGCTGGTGGCATGGCTTGAAGGATGTGAAAGTCTCAAGCACTAGGAAGGCTGATGAGAATATTGATTTTAAGACCATGTTAGATGCCTTGCCGACTTTTTCCCATCATGACAATATTATCTTTAGGTTAGAGTTGTAA

>Glyma08g20875.2   sequence type=CDS   gene model=Glyma08g20875   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGGGACATGATATCGACTTTGCCGAAAACAATACTTCATGACATTCTGTCAAGGATGCCAGAGGAAGATGCTGTTAGGACAAGTGTTTTGTCCAAATCTTGGGCGGAAACGTGGTCCACGTATCCCATCTTGTATTTTTCTGATACTATGATCGTGGGGACGTTTCCGCGGCCGTGGGAGGATTTTTTGAGGAAAAGAAAGAACTTCATTGATCATGTAAAGAGAACATTGCTAAGGTTCCATACCCAGGGCTTAGCAATCAAACAATTTAGGCTTATTATCAATTTTGACCTTCAGTACATGTCCCTGGATGTAGATCATTGGTTGAAGTTGGCTAGTGAAAGTGGTGTTCAGGTACTGGAAATTTGCCTGCCTAAAGGCCATGAACAGGATGAGAAAGCTCTGGACCCATGCTACATCTTGCCAACGGGTATCATTGAAGCCAAATCACTTTATAAGTTAGTGTTGATGGGGGGAATCAGAGTTGATCAAGCATTCCTGAGTCATTCAGTCAAGTTTTTCTCATTGCGAGTATTGTCATTGTGGAGTGTACTTTTGGAAGATGAACAAGCGATTGAGCATCTCATTTCTTGTTGTCCTTTGATTGAAGATGTAACTTTGAAGTGTTGTTCTGTATTGAACAATGGTGGCATAGGAGGTCTACTTGAGCCCAGGACCTCTAGGATGCAATCTATAAGTATGAATGCTCTGCCAAAGCTCAAGAAAGTTGATGTTCAAGGGATACCGGAGATTATTATCATTGATGCTCCAAGTCTAGAGTATTTCTGTTTTTGTCCTGGTGGAGATGTGCATTCACCTTTTAAGATGAATTTTGACAAGTGCAGAAATTTGAGAGTGTTATACTTATGGTCATTGAAGAGCACTACTATCACAGACAAGTGGTTTCTTGATCTATTTACTAAATTTCCCTTCCTTGAGTGTTTGAAATTTGTCAATTGCACAATGTCTGAGACGATTAATATTTCAAGTGCTCAACTCAAGGTCTTAGAGTTATCAAATTGCTCCAAATTGAAGGAGCTCAACCTGGATGCTCCAAATTTATTGTCATGTGGATATTGTGGTGATGGTGCCTCAAAACCTATAATATCTTTTCTGAAAAGCTCTAGTCAACTGGAAGTCAATGCTCAGATCGACATTGATTTTATGGATCTTCATTACTTGAGGGAATGCATCCAAAACTTCAAACCTCAAAATGTTTTGGCTTCACTATCCCTATTTATCCACCAGCCAATTGTCGATGAGTTGAACTTAGAGATCTTGCCAGTTTCATCCTCTCCACCAAGCATCAAACATTTGGACCTGCGTGCTGTTCCAAAAAATGAAACTTTGTATCTGCCTCTTGTCAATAGTGTACTTTCCAGTTGCTGCCCTGCAACTATTTCGTTGAGCTTGAATTCTTTTTTCTGCAGCAGAGCATTCATTGAGTTTTTCTACGAGATGCTAACAGGAAGAAAAGAGGATGAGTGTTTTTGCAGTTCTGGTCATATTAAGTGCTGGTGGCATGGCTTGAAGGATGTGAAAGTCTCAAGCACTAGGAAGGCTGATGAGAATATTGATTTTAAGACCATGTTAGATGCCTTGCCGACTTTTTCCCATCATGACAATATTATCTTTAGGTTAGAGTTGTAA

Predicted protein sequences of Glyma08g20875

Limit To All Plant Sequences

>Glyma08g20875.1   sequence type=predicted peptide   gene model=Glyma08g20875   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERDMISTLPKTILHDILSRMPEEDAVRTSVLSKSWAETWSTYPILYFSDTMIVGTFPRPWEDFLRKRKNFIDHVKRTLLRFHTQGLAIKQFRLIINFDLQYMSLDVDHWLKLASESGVQVLEICLPKGHEQDEKALDPCYILPTGIIEAKSLYKLVLMGGIRVDQAFLSHSVKFFSLRVLSLWSVLLEDEQAIEHLISCCPLIEDVTLKCCSVLNNGGIGGLLEPRTSRMQSISMNALPKLKKVDVQGIPEIIIIDAPSLEYFCFCPGGDVHSPFKMNFDKCRNLRVLYLWSLKSTTITDKWFLDLFTKFPFLECLKFVNCTMSETINISSAQLKVLELSNCSKLKELNLDAPNLLSCGYCGDGASKPIISFLKSSSQLEVNAQIDIDFMDLHYLRECIQNFKPQNVLASLSLFIHQPIVDELNLEILPVSSSPPSIKHLDLRAVPKNETLYLPLVNSVLSSCCPATISLSLNSFFCSRAFIEFFYEMLTGRKEDECFCSSGHIKCWWHGLKDVKVSSTRKADENIDFKTMLDALPTFSHHDNIIFRLEL*

>Glyma08g20875.2   sequence type=predicted peptide   gene model=Glyma08g20875   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERDMISTLPKTILHDILSRMPEEDAVRTSVLSKSWAETWSTYPILYFSDTMIVGTFPRPWEDFLRKRKNFIDHVKRTLLRFHTQGLAIKQFRLIINFDLQYMSLDVDHWLKLASESGVQVLEICLPKGHEQDEKALDPCYILPTGIIEAKSLYKLVLMGGIRVDQAFLSHSVKFFSLRVLSLWSVLLEDEQAIEHLISCCPLIEDVTLKCCSVLNNGGIGGLLEPRTSRMQSISMNALPKLKKVDVQGIPEIIIIDAPSLEYFCFCPGGDVHSPFKMNFDKCRNLRVLYLWSLKSTTITDKWFLDLFTKFPFLECLKFVNCTMSETINISSAQLKVLELSNCSKLKELNLDAPNLLSCGYCGDGASKPIISFLKSSSQLEVNAQIDIDFMDLHYLRECIQNFKPQNVLASLSLFIHQPIVDELNLEILPVSSSPPSIKHLDLRAVPKNETLYLPLVNSVLSSCCPATISLSLNSFFCSRAFIEFFYEMLTGRKEDECFCSSGHIKCWWHGLKDVKVSSTRKADENIDFKTMLDALPTFSHHDNIIFRLEL*

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