Glyma08g20700 - SoyBase

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Report for Sequence Feature Glyma08g20700

Feature Type:	gene_model
Chromosome:	Gm08
Start:	15711641
stop:	15715169
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g20700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G33000	AT	Annotation by Michelle Graham. TAIR10: calcineurin B-like protein 10 \| chr4:15924821-15926398 FORWARD LENGTH=246	SoyBase	E_val: 3.00E-106	ISS
GO:0000271	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process	SoyBase	N/A	ISS
GO:0009825	GO-bp	Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth	SoyBase	N/A	ISS
GO:0009932	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell tip growth	SoyBase	N/A	ISS
GO:0010817	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels	SoyBase	N/A	ISS
GO:0019722	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium-mediated signaling	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0043266	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of potassium ion transport	SoyBase	N/A	ISS
GO:0043481	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0071555	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall organization	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009705	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG0034	KOG	Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein	JGI		ISS
PTHR23056	Panther	CALCINEURIN B	JGI		ISS
PTHR23056:SF15	Panther	SUBFAMILY NOT NAMED	JGI		ISS
UniRef100_C4P7Z3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calcineurin B-like protein 06 n=1 Tax=Vitis vinifera RepID=C4P7Z3_VITVI	SoyBase	E_val: 2.00E-112	ISS
UniRef100_I1KUV0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUV0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g20700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g20700 not represented in the dataset	Glyma08g20700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g20700

Paralog	Evidence	Comments
Glyma07g01300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g20700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g194000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g20700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g20700

Limit To All Plant Sequences

>Glyma08g20700.2   sequence type=transcript   gene model=Glyma08g20700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTAAAAGTATATTGTGTGGGGCCGAACTCACGTGCGCTTTTCCAGCATTTGTTGTCTTTGTTTAAACGTATTAACATATAGCATCGGTGCACGCATCTATTTTATAATTGGGAGGATAATCAATAAACTTAAACTTATGTTATGGCATTCTAACTCTGAACGATGAAATGAAATGGAGTTCCAAGATAAGCGTTTATCTCTGAGATCGAGCTTGACGTTCAGCGAGACGCTGTGCGCAGTGTTCATTCCGTTCATAGGAATAGTCGAAGCTTTGGTTTTCACATTCACTAGTTGCTTCGATTTCCAATCTCCCAGGAATAAGAAGAAACATTCTTCTACCTTCGACGACATTCTCACCCTCGCCGAGGATTCTCCATTTAGTATTAATGAAATCGAGGCCTTGCGTGAGTTGTTCAAGAAGTTGAGTAGTTCTATCATTGATGATGGCCTCATCCACAAGGAAGAACTCACATTGGCACTGTTGAAGACCACCACCGGGGAGAATCTTTTCCTTGACAGGGTGTTTGATGTCTTTGATGAAAAAAGAAACGGCGTTATAGAATTTGAGGAGTTTGTGCATGCTCTCAGTATCTTTCATCCTTGTACTCCTCTGGAAAAGAAAATTGATTTTGCTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAAGTTAGGCAAATGGTTGTTGCCATTCTGTCAGAATGTGGCATGGATCTGGATGATGAAATCCTTGATACCATTATTGATAAGACATTTCAAGATGCTGATGCTGACAAAGATGATAAAATAAGCAAAGAAGAATGGAAGGCATTTGTCATTCGACACCCGACACTCTTGAAGCACATGACTCTACCTCATCTAAAGGACATCACTACACTGTTTACCAGTTTCATCTTCAACACCGAAGTTGATGATTCTCACTGGCATATTAATGGCAATCATTAACATTGAGGAGTTGAAGCTTGTTGTTCTGTTGCACTCTCCCAATGTTGACTGCATCACACCAACGAGAGAATTCATGGAAGTGAATCAAACCACCAAAGAGTGTTAAAAATTTGATCCGAACCAGTAAAAAGGGCTTAAATTGAATCCAATTACTGTTTGGTTTGATCAGCTTACTGTGCATAGTACAGCTCATTTTGGCCGGTGTACAAAATTTATTGGTATGATCATAAAAGGTTTAACTATTTAGCCTCCATGTCTACACAATTTTAGGCCCCGATCGGGGATGGTTGTAACTTATCAGTTTTCAATTTTGAAATGTTATTTTTAAATCCAAGACCTGTTTGGATAATTTTTTGTGAGTTTATGATTTAGTTTTTAAAACACTTTTTACCATATTTACAAAACAAAAAAAATAGGTTTTAGGTTTAG

Coding sequences of Glyma08g20700

Limit To All Plant Sequences

>Glyma08g20700.1   sequence type=CDS   gene model=Glyma08g20700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTCCAAGATAAGCGTTTATCTCTGAGATCGAGCTTGACGTTCAGCGAGACGCTGTGCGCAGTGTTCATTCCGTTCATAGGAATAGTCGAAGCTTTGGTTTTCACATTCACTAGTTGCTTCGATTTCCAATCTCCCAGGAATAAGAAGAAACATTCTTCTACCTTCGACGACATTCTCACCCTCGCCGAGGATTCTCCATTTAGTATTAATGAAATCGAGGCCTTGCGTGAGTTGTTCAAGAAGTTGAGTAGTTCTATCATTGATGATGGCCTCATCCACAAGGAAGAACTCACATTGGCACTGTTGAAGACCACCACCGGGGAGAATCTTTTCCTTGACAGGGTGTTTGATGTCTTTGATGAAAAAAGAAACGGCGTTATAGAATTTGAGGAGTTTGTGCATGCTCTCAGTATCTTTCATCCTTGTACTCCTCTGGAAAAGAAAATTGATTTTGCTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAAGTTAGGCAAATGGTTGTTGCCATTCTGTCAGAATGTGGCATGGATCTGGATGATGAAATCCTTGATACCATTATTGATAAGAAAAAAAATCAGACATTTCAAGATGCTGATGCTGACAAAGATGATAAAATAAGCAAAGAAGAATGGAAGGCATTTGTCATTCGACACCCGACACTCTTGAAGCACATGACTCTACCTCATCTAAAGGACATCACTACACTGTTTACCAGTTTCATCTTCAACACCGAAGTTGATGATTCTCACTGGCATATTAATGGCAATCATTAA

>Glyma08g20700.2   sequence type=CDS   gene model=Glyma08g20700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTCCAAGATAAGCGTTTATCTCTGAGATCGAGCTTGACGTTCAGCGAGACGCTGTGCGCAGTGTTCATTCCGTTCATAGGAATAGTCGAAGCTTTGGTTTTCACATTCACTAGTTGCTTCGATTTCCAATCTCCCAGGAATAAGAAGAAACATTCTTCTACCTTCGACGACATTCTCACCCTCGCCGAGGATTCTCCATTTAGTATTAATGAAATCGAGGCCTTGCGTGAGTTGTTCAAGAAGTTGAGTAGTTCTATCATTGATGATGGCCTCATCCACAAGGAAGAACTCACATTGGCACTGTTGAAGACCACCACCGGGGAGAATCTTTTCCTTGACAGGGTGTTTGATGTCTTTGATGAAAAAAGAAACGGCGTTATAGAATTTGAGGAGTTTGTGCATGCTCTCAGTATCTTTCATCCTTGTACTCCTCTGGAAAAGAAAATTGATTTTGCTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAAGTTAGGCAAATGGTTGTTGCCATTCTGTCAGAATGTGGCATGGATCTGGATGATGAAATCCTTGATACCATTATTGATAAGACATTTCAAGATGCTGATGCTGACAAAGATGATAAAATAAGCAAAGAAGAATGGAAGGCATTTGTCATTCGACACCCGACACTCTTGAAGCACATGACTCTACCTCATCTAAAGGACATCACTACACTGTTTACCAGTTTCATCTTCAACACCGAAGTTGATGATTCTCACTGGCATATTAATGGCAATCATTAA

Predicted protein sequences of Glyma08g20700

Limit To All Plant Sequences

>Glyma08g20700.1   sequence type=predicted peptide   gene model=Glyma08g20700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFQDKRLSLRSSLTFSETLCAVFIPFIGIVEALVFTFTSCFDFQSPRNKKKHSSTFDDILTLAEDSPFSINEIEALRELFKKLSSSIIDDGLIHKEELTLALLKTTTGENLFLDRVFDVFDEKRNGVIEFEEFVHALSIFHPCTPLEKKIDFAFRLYDLRQTGYIEREEVRQMVVAILSECGMDLDDEILDTIIDKKKNQTFQDADADKDDKISKEEWKAFVIRHPTLLKHMTLPHLKDITTLFTSFIFNTEVDDSHWHINGNH*

>Glyma08g20700.2   sequence type=predicted peptide   gene model=Glyma08g20700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFQDKRLSLRSSLTFSETLCAVFIPFIGIVEALVFTFTSCFDFQSPRNKKKHSSTFDDILTLAEDSPFSINEIEALRELFKKLSSSIIDDGLIHKEELTLALLKTTTGENLFLDRVFDVFDEKRNGVIEFEEFVHALSIFHPCTPLEKKIDFAFRLYDLRQTGYIEREEVRQMVVAILSECGMDLDDEILDTIIDKTFQDADADKDDKISKEEWKAFVIRHPTLLKHMTLPHLKDITTLFTSFIFNTEVDDSHWHINGNH*

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