Report for Sequence Feature Glyma08g20680
Feature Type: gene_model
Chromosome: Gm08
Start: 15699156
stop: 15701972
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g20680
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G55160 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19530.1); Has 63 Blast hits to 63 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:20578476-20579803 FORWARD LENGTH=188
SoyBase E_val: 8.00E-43 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009536 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plastid
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_C6SX27 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6SX27_SOYBN
SoyBase E_val: 4.00E-94 ISS
UniRef100_G7ZWP7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: MLO-like protein n=2 Tax=Medicago truncatula RepID=G7ZWP7_MEDTR
SoyBase E_val: 3.00E-22 ISS
Expression Patterns of Glyma08g20680
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g20680
Paralog Evidence Comments
Glyma07g01270 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g20680 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g193800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g20680
Transcripts of Glyma08g20680
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g20680.2 sequence type=transcript gene model=Glyma08g20680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TCAAATCAAATCTCTTGTTTTGATGCAAAGTTTGCCTCTTTTGTAACAGCGCAACTGAAGCAGTTTCGGGGGCAACAGAAATCGAACGGGTTCTCCTCGCCGGCGGCGATGGATACACACGCGGCTGCTCCGCCACCGCCGCCAAAGGAACCCTTTATTCGGCGCTACAAGTTCGTTTGGCCTGTGCTTTTGGCTGTGAATCTCGGTGTCGGAGCTTATTTGTTTATGGGGACAAAGAAGAAAGATACTGGTGAGGAGGAACAAGATGCTACTCCTGTCTCAACTAAGGATGCTACCCCTCATGTTGTTGAGACTCCTGTGTCATCACCATCTATTACAAATCCCGTGATCAATCGAGAGCCAATTCCAGAAAACCAACAACGTGAACTCTTGAAGTGGATATTGGAAGAGAAGAGGAAGGTCAAAGCAAAAGACGCAGAGGAGAAGCGAAAAATTGATGAAGAGAAAGCTCTGCTTAAAAAGCTTATTCGGTCAAAATCCATCCCAAGTGTCTAATGATGTTATCTTTATCTGCAGGGGAAAAAGAAGTTCTTGAATTCAAATGTACATGAATTGATTCATCCAATGCTTTTGTTTTCTGTTTACTTGGTTTGCTGATGGATTTTAGATTGTTGATGGCACTTGATGTACAATGCCCATGTTCTTTTTTACCTATAGATGTCATTTGGATTTTCAATATATTTAATGGTTTTGTGAATAAAGCCAGATTTGAGTTAGAGCCTCAGCACATGGCTAGTGCAGAGGCTGGTGAGCAGTGTTTCTTAGGTAATTTAAAGCACTAAGGTGAGTGAGGGTACTATTTAAATTGTGCAAATGCAATAAAATTTTATTGAATTTAAGTATTTA
Coding sequences of Glyma08g20680
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g20680.1 sequence type=CDS gene model=Glyma08g20680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGTGAAGAAGGTCCTCCAAAGCTATATACCAACAAGCCCGGAAAAGCGCAACTGAAGCAGTTTCGGGGGCAACAGAAATCGAACGGGTTCTCCTCGCCGGCGGCGATGGATACACACGCGGCTGCTCCGCCACCGCCGCCAAAGGAACCCTTTATTCGGCGCTACAAGTTCGTTTGGCCTGTGCTTTTGGCTGTGAATCTCGGTGTCGGAGCTTATTTGTTTATGGGGACAAAGAAGAAAGATACTGGTGAGGAGGAACAAGATGCTACTCCTGTCTCAACTAAGGATGCTACCCCTCATGTTGTTGAGACTCCTGTGTCATCACCATCTATTACAAATCCCGTGATCAATCGAGAGCCAATTCCAGAAAACCAACAACGTGAACTCTTGAAGTGGATATTGGAAGAGAAGAGGAAGGTCAAAGCAAAAGACGCAGAGGAGAAGCGAAAAATTGATGAAGAGAAAGCTCTGCTTAAAAAGCTTATTCGGTCAAAATCCATCCCAAGTGTCTAA
>Glyma08g20680.2 sequence type=CDS gene model=Glyma08g20680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATACACACGCGGCTGCTCCGCCACCGCCGCCAAAGGAACCCTTTATTCGGCGCTACAAGTTCGTTTGGCCTGTGCTTTTGGCTGTGAATCTCGGTGTCGGAGCTTATTTGTTTATGGGGACAAAGAAGAAAGATACTGGTGAGGAGGAACAAGATGCTACTCCTGTCTCAACTAAGGATGCTACCCCTCATGTTGTTGAGACTCCTGTGTCATCACCATCTATTACAAATCCCGTGATCAATCGAGAGCCAATTCCAGAAAACCAACAACGTGAACTCTTGAAGTGGATATTGGAAGAGAAGAGGAAGGTCAAAGCAAAAGACGCAGAGGAGAAGCGAAAAATTGATGAAGAGAAAGCTCTGCTTAAAAAGCTTATTCGGTCAAAATCCATCCCAAGTGTCTAA
Predicted protein sequences of Glyma08g20680
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g20680.1 sequence type=predicted peptide gene model=Glyma08g20680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSEEGPPKLYTNKPGKAQLKQFRGQQKSNGFSSPAAMDTHAAAPPPPPKEPFIRRYKFVWPVLLAVNLGVGAYLFMGTKKKDTGEEEQDATPVSTKDATPHVVETPVSSPSITNPVINREPIPENQQRELLKWILEEKRKVKAKDAEEKRKIDEEKALLKKLIRSKSIPSV*
>Glyma08g20680.2 sequence type=predicted peptide gene model=Glyma08g20680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDTHAAAPPPPPKEPFIRRYKFVWPVLLAVNLGVGAYLFMGTKKKDTGEEEQDATPVSTKDATPHVVETPVSSPSITNPVINREPIPENQQRELLKWILEEKRKVKAKDAEEKRKIDEEKALLKKLIRSKSIPSV*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
