Glyma08g20640 - SoyBase

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Report for Sequence Feature Glyma08g20640

Feature Type:	gene_model
Chromosome:	Gm08
Start:	15656905
stop:	15660881
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g20640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G13772	AT	Annotation by Michelle Graham. TAIR10: transmembrane nine 7 \| chr3:4521712-4524394 REVERSE LENGTH=641	SoyBase	E_val: 0	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0006878	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular copper ion homeostasis	SoyBase	N/A	ISS
GO:0006882	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular zinc ion homeostasis	SoyBase	N/A	ISS
GO:0009086	GO-bp	Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
KOG1278	KOG	Endosomal membrane proteins, EMP70	JGI		ISS
PTHR10766	Panther	TRANSMEMBRANE 9 SUPERFAMILY PROTEIN MEMBER	JGI		ISS
PF02990	PFAM	Endomembrane protein 70	JGI		ISS
UniRef100_B9SN38	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Endosomal P24A protein, putative n=1 Tax=Ricinus communis RepID=B9SN38_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KUU6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUU6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g20640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g20640

Paralog	Evidence	Comments
Glyma07g01240	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g20640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g193400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g20640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g20640

Limit To All Plant Sequences

>Glyma08g20640.1   sequence type=CDS   gene model=Glyma08g20640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAGAAGATGATGGCAAGCACGGCCATCTCCCTCGTCTTCGCCGCGCTCTTCCTCTTCTCCTCCGTCCACTCTTTCTACCTCCCTGGTGTCGCTCCTCGCGATTTCCAAATTGGTGACCCCCTCTTTGTCAAAGTGAACAAGTTATCATCTACCAAGACTCAACTTCCATATGACTACTACTTCTTGAAGTATTGCAAACCCAAAACGATATTGAACAATGCAGAAAATTTGGGAGAGGTTCTTAGAGGTGATCGTATTGAGAATTCAGTATATACATTTCATATGAGGAAGGAACAGTCATGTACTGTTGTTTGTCATGAAACATTGGATGCTGAATCTGCAAAGAGTTTTAAAGAAAAAATTGATGATGAATATCGAGTGAACATGATTTTGGATAACCTTCCAGTTGCTGTTCGTAGACAAAGGAGGGATGGAGGTCAATCAACAACATATGAACATGGTTTTCGTGTTGGGTTCAAAGGAAACTATCAAGGGAGCAAGGAGGAGAAGTATTTTATTAATAACCACTTGAGTTTCAGAGTCATGTATCACAAGGATCCTGAAACTGGTTCTGCTCGTATTGTTGGATTTGAGGTCACCCCAAACAGTATAAATCATGAATACAAGGAGTGGAATGACAAGAATCCACAGGTAACAACATGCAATAAAGATACCAAGAATTTGATGCAAGGTAGTACTGTCCCACAAGAAGTTGATACAAGCAAGGATATTGTATTCACATATGATGTTTCCTTCACGGAAAGTGATATCAAATGGGCATCACGGTGGGACACATATCTTTTAATGAATGATGATCAGATCCACTGGTTCTCCATCATTAACTCTCTGATGATTGTTCTTTTCCTGTCTGGAATGGTGGCAATGATCATGATGAGAACTCTTTTCAGAGACATTGCCAATTATAATCAGCTAGAAACCCAAGATGAGGCCCAAGAAGAAACAGGGTGGAAACTTGTTCATGGAGATGTTTTTAGGCCACCAATCAATTCAAATTTGCTTTGTGTTTATGTTGGTACTGGTGTTCAGATCTTTGCAATGACACTTGTGACAATGATATTTGCTTTGCTAGGGTTTTTGTCTCCATCTAATCGGGGAGGTCTAATGACTGCAATGGTTCTGTTGTGGGTTTTTATGGGCTTATTTGCTGGCTACTCCTCAGCACGTTTGTACAAGATGTTCAAGGGCACAGAATGGAAAAGGAACACCTTGAAAACTGCATTTATGTTCCCGGGCATTCTTTTTGCTGTCTTCTTTGTGCTGAATGCTTTAATCTGGGGGGAGCAGTCCTCCGGGGCCGTCCCTTTTGGAACAATGTTTGCTCTAGTCTGCTTATGGTTTGGTATATCAGTACCCCTGGTCTTTGTGGGCAGTTACTTGGGCTTTAAAAAGCCGGCAATTGAAGACCCAGTGAAGACTAATAAAATTCCTAGGCAGGTACCTGAGCAGGCATGGTATATGAAATCCGTCTTCTCAATTCTTATTGGAGGCATTCTTCCATTTGGTGCAGTGTTCATCGAGCTCTTCTTTATCCTGACATCAATATGGCTGAACCAGTTCTATTACATCTTCGGCTTTCTTTTCATAGTGTTTGTGATCCTATTAATCACCTGTGCCGAGATTACCATTGTGCTTTGCTACTTCCAATTGTGCAGTGAGGATTACAATTGGTGGTGGAGATCTTACCTCACTGCTGGGTCCTCTGCGCTGTACCTTTTCCTCTACTCAATTTTCTACTTCTTTACCAAGTTGGAGATTTCAAAGCTGGTCTCGGGCATCCTTTACTTTGGATACATGATAATTGTTTCATATGCCTTCTTTGTGTTGACGGGAACTATCGGCTTCTATGCATGCTTCTGGTTTGTTCGCAAGATCTACTCGTCGGTGAAGATTGACTGA

Predicted protein sequences of Glyma08g20640

Limit To All Plant Sequences

>Glyma08g20640.1   sequence type=predicted peptide   gene model=Glyma08g20640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKKMMASTAISLVFAALFLFSSVHSFYLPGVAPRDFQIGDPLFVKVNKLSSTKTQLPYDYYFLKYCKPKTILNNAENLGEVLRGDRIENSVYTFHMRKEQSCTVVCHETLDAESAKSFKEKIDDEYRVNMILDNLPVAVRRQRRDGGQSTTYEHGFRVGFKGNYQGSKEEKYFINNHLSFRVMYHKDPETGSARIVGFEVTPNSINHEYKEWNDKNPQVTTCNKDTKNLMQGSTVPQEVDTSKDIVFTYDVSFTESDIKWASRWDTYLLMNDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLFRDIANYNQLETQDEAQEETGWKLVHGDVFRPPINSNLLCVYVGTGVQIFAMTLVTMIFALLGFLSPSNRGGLMTAMVLLWVFMGLFAGYSSARLYKMFKGTEWKRNTLKTAFMFPGILFAVFFVLNALIWGEQSSGAVPFGTMFALVCLWFGISVPLVFVGSYLGFKKPAIEDPVKTNKIPRQVPEQAWYMKSVFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFVILLITCAEITIVLCYFQLCSEDYNWWWRSYLTAGSSALYLFLYSIFYFFTKLEISKLVSGILYFGYMIIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID*

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