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Report for Sequence Feature Glyma08g20625

Feature Type:gene_model
Chromosome:Gm08
Start:15626690
stop:15632810
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g20625
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G56890AT Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein | chr5:23010801-23015559 REVERSE LENGTH=1113 SoyBaseE_val: 3.00E-19ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004713GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
UniRef100_C6ZRW4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase family protein n=1 Tax=Glycine max RepID=C6ZRW4_SOYBN SoyBaseE_val: 4.00E-43ISS
UniRef100_I1MCZ4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MCZ4_SOYBN SoyBaseE_val: 5.00E-75ISS

Expression Patterns of Glyma08g20625
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g20625 not represented in the dataset
Glyma08g20625 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g20625 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g193300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g20625
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma08g20625
>Glyma08g20625.2   sequence type=transcript   gene model=Glyma08g20625   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTCCAATCAGCCTCAATGACTTCCCCACCCCCTGAATGGGTTGTGTTTAAGAACTTATTCGGCTTCAATCTCACTGGACTCAATAGTAAGGCAACTTTGGATGCTCAAGGTCAAGAATCCTGGTCAAAAGCTGCTTGCTGCAGGGTCATGAAATGCCACAAGGAGTGAAGTTTGATGATATAACAACATTTTTAATATATAAGAAATTCTGGCAGACAGAGATTCTCAATGATGCTTCTGACTTTGGTGACTATGAAGTGCTCTATGTTCATTATCCAGGCCTTCCACCATCTCCACCTTCAAATGTTCATGGTATAGATGTTGCATCATACCCTGGTCACGGCAACAACGGAACAATAGTGAAACCTTTGGGAGTAGATATCTCAGGGAAGAAAAAAGAAGGGGGTGGTGGAAGAATGGTTATTATGATCGAGCTGTCATCTTTTACTGCCTTTGTTCTATTCATTGGAGTTGCCTGGCTTTGTCTCTTGAAATGTGGTTCTTGCACTCTCGAACCTGAACAAATTCCAGATGACAAAATTTCATCCTCTTCAAAGCAATCAGGGCATATATTTGGTTGAAGGGAAAGACACTTTTAATATTTTTGAATGAGGAGGGAGTCTCGATCTCTTCAAAGATTGAATTATTCTCATGAACAGCCAAGTTTGATAGAGTTCCTCTTTTATCTTTCTTCTCATTTGCTTTTATTTCTTTCATTAT
Coding sequences of Glyma08g20625
>Glyma08g20625.1   sequence type=CDS   gene model=Glyma08g20625   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCACAAGGAGTGAAGTTTGATGATATAACAACATTTTTAATATATAAGAAATTCTGGCAGACAGAGATTCTCAATGATGCTTCTGACTTTGGTGACTATGAAGTGCTCTATGTTCATTATCCAGGCCTTCCACCATCTCCACCTTCAAATGTTCATGGTATAGATGTTGCATCATACCCTGGTCACGGCAACAACGGAACAATAGTGAAACCTTTGGGAGTAGATATCTCAGGGAAGAAAAAAGAAGGGGGTGGTGGAAGAATGGTTATTATGATCGAGCTGTCATCTTTTACTGCCTTTGTTCTATTCATTGGAGTTGCCTGGCTTTGTCTCTTGAAATGTGGTTCTTGCACTCTCGAACCTGAACAAATTCCAGATGACAAAATTTCATCCTCTTCAAAGCAATCAGGTGCAATATGTCTTCATCAGTAG

>Glyma08g20625.2   sequence type=CDS   gene model=Glyma08g20625   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCACAAGGAGTGAAGTTTGATGATATAACAACATTTTTAATATATAAGAAATTCTGGCAGACAGAGATTCTCAATGATGCTTCTGACTTTGGTGACTATGAAGTGCTCTATGTTCATTATCCAGGCCTTCCACCATCTCCACCTTCAAATGTTCATGGTATAGATGTTGCATCATACCCTGGTCACGGCAACAACGGAACAATAGTGAAACCTTTGGGAGTAGATATCTCAGGGAAGAAAAAAGAAGGGGGTGGTGGAAGAATGGTTATTATGATCGAGCTGTCATCTTTTACTGCCTTTGTTCTATTCATTGGAGTTGCCTGGCTTTGTCTCTTGAAATGTGGTTCTTGCACTCTCGAACCTGAACAAATTCCAGATGACAAAATTTCATCCTCTTCAAAGCAATCAGGGCATATATTTGGTTGA
Predicted protein sequences of Glyma08g20625
>Glyma08g20625.1   sequence type=predicted peptide   gene model=Glyma08g20625   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPQGVKFDDITTFLIYKKFWQTEILNDASDFGDYEVLYVHYPGLPPSPPSNVHGIDVASYPGHGNNGTIVKPLGVDISGKKKEGGGGRMVIMIELSSFTAFVLFIGVAWLCLLKCGSCTLEPEQIPDDKISSSSKQSGAICLHQ*

>Glyma08g20625.2   sequence type=predicted peptide   gene model=Glyma08g20625   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPQGVKFDDITTFLIYKKFWQTEILNDASDFGDYEVLYVHYPGLPPSPPSNVHGIDVASYPGHGNNGTIVKPLGVDISGKKKEGGGGRMVIMIELSSFTAFVLFIGVAWLCLLKCGSCTLEPEQIPDDKISSSSKQSGHIFG*






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