Glyma08g20560 - SoyBase

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Report for Sequence Feature Glyma08g20560

Feature Type:	gene_model
Chromosome:	Gm08
Start:	15565669
stop:	15572368
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g20560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G13860	AT	Annotation by Michelle Graham. TAIR10: heat shock protein 60-3A \| chr3:4561704-4565133 REVERSE LENGTH=572	SoyBase	E_val: 0	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0042026	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein refolding	SoyBase	N/A	ISS
GO:0044267	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular protein metabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG0356	KOG	Mitochondrial chaperonin, Cpn60/Hsp60p	JGI		ISS
PTHR11353	Panther	CHAPERONIN	JGI		ISS
PTHR11353:SF9	Panther	CHAPERONIN-60KDA, CH60	JGI		ISS
PF00118	PFAM	TCP-1/cpn60 chaperonin family	JGI		ISS
UniRef100_G7LHF7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chaperonin CPN60-like protein n=1 Tax=Medicago truncatula RepID=G7LHF7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KUU0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KUU0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g20560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g20560

Paralog	Evidence	Comments
Glyma07g01190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g20560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g192700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g20560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g20560

Limit To All Plant Sequences

>Glyma08g20560.2   sequence type=transcript   gene model=Glyma08g20560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAATCTCCAAAGTCACATTTCACATAGCAGAAACTTAAACCCTCTGTAAAGCCCTACTTGTTCTCCTGGCTGCCAAGCCATTCCTGAATCCTGATTTGACTTCCTCGGAATTTGATTTCCAATTCAATTGCAATGTATCGATTAGCTCGTAGAGTAGCTTCTTCCATTGCTTCTCCCTCTGCTAAGAACCTCGTATATGGTGGAGTATTGTCAAGCAGAAATTTTGTGAGCAAAGATATCAACTTTGGGGTCGGGGCTCGTGCCGCAATCCTCCAGGGGGTAACTGAGGTTGCTGATGCTGTCAAAGTTACCATGGGACCCAAGGTATGTATGTTTCTCATTTAGTATAACTGCTACTGATGCTATTGTTGAATGCAATTTTTCCAACATGTGTCTAACCTTTTCTTTTGGTAATTTGTTATGCATGCTTGCAAGTTTTTGTTGTGCCAAATTATTCATTTTTTTGGTTGTGATGAGTCTGGTGGACAAAGGTTGACAAGAGGAGTTGATGTGATGGAGAGTAAATTTTATTTTTCCTGCTTTTGTTTTGAATTGGTTGAATTAGGGTCACAATGTGATAATTGAGAGAAGTCGTGGGAATCCCAGGATCACGAAGGACGGTGTGACTGTGGCCAGAAGTATCAAATTTAAAGACAAATCCAAAAATGTTGGGGCGGATCTTGTCAAGCAGGTGGCCAAGGCTACCAACACTGCTGCTGGAGACGGTACAACTTGTGCAACTGTTTTGACTCAGGCAATACTCACAGAAGGATGTAAATCGATTGCTGCTGGCATAAATGTTATGGACTTACGTAATGGAATAAATAAGGCAGTTGATGCTGTAATTACTGAGTTGAAGAGCAGAACATTGATGATAAGTACACCAGAAGAGATAACCCAGGTTGGAACTATATCTGCGAATGGGGAGCGTGATATTGGAGAATTGATGGCTAGGGCAATGGAGAAAGTTGGGAAGGAAGGAGTCATTACTGTTGTTGATGGGAACACTTTGGATAATGAATTGGAAGTGGTAGAAGGAATGAAGTTAACCAGAGGATACATATCTCCTTATTTTATTACTGATCAGAAGACCCGGAAATGTGAATTGGAGAACCCCTTTATTCTCATCCATGACAAGAAAATTTCTGACATGAATTCATTGCTGAAAATACTGGAGCTGGCAGTAACGAAAAAAAGATCACTCTTAGTTGTTGCTGAAGATGTTGAGAGTGATGCGTTGGCTATGCTCATACTCAACAAGCATCACGCGGGGCTTAAGGTTTGTGCTGTAAAAGCTCCTGGTTTTGGGGATAATAGAAGAGCAAGTCTAGACGATCTTGCAATTCTTACTGGAGGAGAGGTCATCACTGATGAGCGTGGTTTGTCTCTTGATAAAGTCCAACCAGAAATGCTTGGCACTGCAAAAAAGGTTACTATCACCATTGATGACACTATTATTCTACATGGTGGTGGGGATAAGAAGGTCATTGAAGAGAGATGTGAACAGCTGAGGACAGCTATGGAAGAGAGTTCTGCCACATTTGATAAAGAAAAAGCACAGGAACGCCTATCAAAACTATCTGGTGGTGTAGCTGTTTTCAAAGTTGGGGGGGCTAGTGAGGCCGAAGTTGGGGAAAGGAAAGATAGAGTAACAGATGCTTTAAATGCCACTAGAGCTGCTGTGGAAGAGGGAATTGTTCCAGGTGGTGGAGTTGCTCTCCTATATGCTACCAAAGTCTTGGATAACCTTCAAACTCAAAATGAAGATGAGAAGAGAGGAGTACAAATTATTCAGAATGCACTCAAGGCACCTACCTCTACAATAGCTTCAAATGCTGGTTTTGATGGTGCTTTGGTCCACAGCAAATTGTTGGAACAAGATGATCATAATTTAGGTTTTGATGCTGCTAAAGGTGTCTATGTTGATATGGTAAAGGCTGGAATAATAGATCCTCTTAAAGTTGTTAGAACAGCTTTGGTAGATGCTGCCAGTGTGTCATTGCTACTGACAACAACCGAGGCAGCTGTGTTGGATAATCCACATGACAAAAATAAACCTCCTAGTCGGGTGCCAGATATGGATGATTTGGATCTCTAACCTGCTTCACCAAATGGTGAAAACATTTTTTTGTACCAATGTCGAATTTTGCTCTTCCTTTTAAGGATGTAGCTGAGGCTGAGGTATATAAACTTGGGTGGCAAAATCTGTGTTTTACTGAGTGAGGTTAAAATTATGCAACCTTCTATTTACAGTGTTTTAGGAAAAACTGATAGGAAAAGATGAAAACTTGCCTCATTCTATAGGTGTTCATCCAATTTATGTTACAAGTGCAAATCAAAGAACTATTGAAAGTCAAGTTTTTGCTCCATTTTCCCCCCTTATTGTAATGCAATTTGCTTTAGTCATCAAATTTCAATTTGGGTTCTGTTCTTGTTTAACCATTCAATTAATTTTACTAGTTTTAACA

Coding sequences of Glyma08g20560

Limit To All Plant Sequences

>Glyma08g20560.1   sequence type=CDS   gene model=Glyma08g20560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATCGATTAGCTCGTAGAGTAGCTTCTTCCATTGCTTCTCCCTCTGCTAAGAACCTCGTATATGGTGGAGTATTGTCAAGCAGAAATTTTGTGAGCAAAGATATCAACTTTGGGGTCGGGGCTCGTGCCGCAATCCTCCAGGGGGTAACTGAGGTTGCTGATGCTGTCAAAGTTACCATGGGACCCAAGGGTCACAATGTGATAATTGAGAGAAGTCGTGGGAATCCCAGGATCACGAAGGACGGTGTGACTGTGGCCAGAAGTATCAAATTTAAAGACAAATCCAAAAATGTTGGGGCGGATCTTGTCAAGCAGGTGGCCAAGGCTACCAACACTGCTGCTGGAGACGGTACAACTTGTGCAACTGTTTTGACTCAGGCAATACTCACAGAAGGATGTAAATCGATTGCTGCTGGCATAAATGTTATGGACTTACGTAATGGAATAAATAAGGCAGTTGATGCTGTAATTACTGAGTTGAAGAGCAGAACATTGATGATAAGTACACCAGAAGAGATAACCCAGGTTGGAACTATATCTGCGAATGGGGAGCGTGATATTGGAGAATTGATGGCTAGGGCAATGGAGAAAGTTGGGAAGGAAGGAGTCATTACTGTTGTTGATGGGAACACTTTGGATAATGAATTGGAAGTGGTAGAAGGAATGAAGTTAACCAGAGGATACATATCTCCTTATTTTATTACTGATCAGAAGACCCGGAAATGTGAATTGGAGAACCCCTTTATTCTCATCCATGACAAGAAAATTTCTGACATGAATTCATTGCTGAAAATACTGGAGCTGGCAGTAACGAAAAAAAGATCACTCTTAGTTGTTGCTGAAGATGTTGAGAGTGATGCGTTGGCTATGCTCATACTCAACAAGCATCACGCGGGGCTTAAGGTTTGTGCTGTAAAAGCTCCTGGTTTTGGGGATAATAGAAGAGCAAGTCTAGACGATCTTGCAATTCTTACTGGAGGAGAGGTCATCACTGATGAGCGTGGTTTGTCTCTTGATAAAGTCCAACCAGAAATGCTTGGCACTGCAAAAAAGGTTACTATCACCATTGATGACACTATTATTCTACATGGTGGTGGGGATAAGAAGGTCATTGAAGAGAGATGTGAACAGCTGAGGACAGCTATGGAAGAGAGTTCTGCCACATTTGATAAAGAAAAAGCACAGGAACGCCTATCAAAACTATCTGGTGGTGTAGCTGTTTTCAAAGTTGGGGGGGCTAGTGAGGCCGAAGTTGGGGAAAGGAAAGATAGAGTAACAGATGCTTTAAATGCCACTAGAGCTGCTGTGGAAGAGGGAATTGTTCCAGGTGGTGGAGTTGCTCTCCTATATGCTACCAAAGTCTTGGATAACCTTCAAACTCAAAATGAAGATGAGAAGAGAGGAGTACAAATTATTCAGAATGCACTCAAGGCACCTACCTCTACAATAGCTTCAAATGCTGGTTTTGATGGTGCTTTGGTCCACAGCAAATTGTTGGAACAAGATGATCATAATTTAGGTTTTGATGCTGCTAAAGGTGTCTATGTTGATATGGTAAAGGCTGGAATAATAGATCCTCTTAAAGTTGTTAGAACAGCTTTGGTAGATGCTGCCAGTGTGTCATTGCTACTGACAACAACCGAGGCAGCTGTGTTGGATAATCCACATGACAAAAATAAACCTCCTAGTCGGGTGCCAGATATGGATGATTTGGATCTCTAA

>Glyma08g20560.2   sequence type=CDS   gene model=Glyma08g20560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTTACGTAATGGAATAAATAAGGCAGTTGATGCTGTAATTACTGAGTTGAAGAGCAGAACATTGATGATAAGTACACCAGAAGAGATAACCCAGGTTGGAACTATATCTGCGAATGGGGAGCGTGATATTGGAGAATTGATGGCTAGGGCAATGGAGAAAGTTGGGAAGGAAGGAGTCATTACTGTTGTTGATGGGAACACTTTGGATAATGAATTGGAAGTGGTAGAAGGAATGAAGTTAACCAGAGGATACATATCTCCTTATTTTATTACTGATCAGAAGACCCGGAAATGTGAATTGGAGAACCCCTTTATTCTCATCCATGACAAGAAAATTTCTGACATGAATTCATTGCTGAAAATACTGGAGCTGGCAGTAACGAAAAAAAGATCACTCTTAGTTGTTGCTGAAGATGTTGAGAGTGATGCGTTGGCTATGCTCATACTCAACAAGCATCACGCGGGGCTTAAGGTTTGTGCTGTAAAAGCTCCTGGTTTTGGGGATAATAGAAGAGCAAGTCTAGACGATCTTGCAATTCTTACTGGAGGAGAGGTCATCACTGATGAGCGTGGTTTGTCTCTTGATAAAGTCCAACCAGAAATGCTTGGCACTGCAAAAAAGGTTACTATCACCATTGATGACACTATTATTCTACATGGTGGTGGGGATAAGAAGGTCATTGAAGAGAGATGTGAACAGCTGAGGACAGCTATGGAAGAGAGTTCTGCCACATTTGATAAAGAAAAAGCACAGGAACGCCTATCAAAACTATCTGGTGGTGTAGCTGTTTTCAAAGTTGGGGGGGCTAGTGAGGCCGAAGTTGGGGAAAGGAAAGATAGAGTAACAGATGCTTTAAATGCCACTAGAGCTGCTGTGGAAGAGGGAATTGTTCCAGGTGGTGGAGTTGCTCTCCTATATGCTACCAAAGTCTTGGATAACCTTCAAACTCAAAATGAAGATGAGAAGAGAGGAGTACAAATTATTCAGAATGCACTCAAGGCACCTACCTCTACAATAGCTTCAAATGCTGGTTTTGATGGTGCTTTGGTCCACAGCAAATTGTTGGAACAAGATGATCATAATTTAGGTTTTGATGCTGCTAAAGGTGTCTATGTTGATATGGTAAAGGCTGGAATAATAGATCCTCTTAAAGTTGTTAGAACAGCTTTGGTAGATGCTGCCAGTGTGTCATTGCTACTGACAACAACCGAGGCAGCTGTGTTGGATAATCCACATGACAAAAATAAACCTCCTAGTCGGGTGCCAGATATGGATGATTTGGATCTCTAA

Predicted protein sequences of Glyma08g20560

Limit To All Plant Sequences

>Glyma08g20560.1   sequence type=predicted peptide   gene model=Glyma08g20560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYRLARRVASSIASPSAKNLVYGGVLSSRNFVSKDINFGVGARAAILQGVTEVADAVKVTMGPKGHNVIIERSRGNPRITKDGVTVARSIKFKDKSKNVGADLVKQVAKATNTAAGDGTTCATVLTQAILTEGCKSIAAGINVMDLRNGINKAVDAVITELKSRTLMISTPEEITQVGTISANGERDIGELMARAMEKVGKEGVITVVDGNTLDNELEVVEGMKLTRGYISPYFITDQKTRKCELENPFILIHDKKISDMNSLLKILELAVTKKRSLLVVAEDVESDALAMLILNKHHAGLKVCAVKAPGFGDNRRASLDDLAILTGGEVITDERGLSLDKVQPEMLGTAKKVTITIDDTIILHGGGDKKVIEERCEQLRTAMEESSATFDKEKAQERLSKLSGGVAVFKVGGASEAEVGERKDRVTDALNATRAAVEEGIVPGGGVALLYATKVLDNLQTQNEDEKRGVQIIQNALKAPTSTIASNAGFDGALVHSKLLEQDDHNLGFDAAKGVYVDMVKAGIIDPLKVVRTALVDAASVSLLLTTTEAAVLDNPHDKNKPPSRVPDMDDLDL*

>Glyma08g20560.2   sequence type=predicted peptide   gene model=Glyma08g20560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLRNGINKAVDAVITELKSRTLMISTPEEITQVGTISANGERDIGELMARAMEKVGKEGVITVVDGNTLDNELEVVEGMKLTRGYISPYFITDQKTRKCELENPFILIHDKKISDMNSLLKILELAVTKKRSLLVVAEDVESDALAMLILNKHHAGLKVCAVKAPGFGDNRRASLDDLAILTGGEVITDERGLSLDKVQPEMLGTAKKVTITIDDTIILHGGGDKKVIEERCEQLRTAMEESSATFDKEKAQERLSKLSGGVAVFKVGGASEAEVGERKDRVTDALNATRAAVEEGIVPGGGVALLYATKVLDNLQTQNEDEKRGVQIIQNALKAPTSTIASNAGFDGALVHSKLLEQDDHNLGFDAAKGVYVDMVKAGIIDPLKVVRTALVDAASVSLLLTTTEAAVLDNPHDKNKPPSRVPDMDDLDL*

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