Report for Sequence Feature Glyma08g20550
Feature Type: gene_model
Chromosome: Gm08
Start: 15560031
stop: 15562785
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g20550
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G13850 AT
Annotation by Michelle Graham. TAIR10: LOB domain-containing protein 22 | chr3:4559910-4560716 FORWARD LENGTH=268
SoyBase E_val: 2.00E-55 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
PF03195 PFAM
Protein of unknown function DUF260
JGI ISS
UniRef100_G7LHF8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: LOB domain-containing protein n=1 Tax=Medicago truncatula RepID=G7LHF8_MEDTR
SoyBase E_val: 4.00E-101 ISS
UniRef100_UPI00023392C7 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI00023392C7 related cluster n=1 Tax=unknown RepID=UPI00023392C7
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g20550
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g20550
Paralog Evidence Comments
Glyma07g01170 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g20550 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g192600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g20550
Coding sequences of Glyma08g20550
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g20550.2 sequence type=CDS gene model=Glyma08g20550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCAGCCGAAATCTCACACCCCTTTTTTTGTCCCTCCCCAAAAAGCCATGAACAACAATAACCCTAACAACAACAGTAACAGAATCTCATCACCAAGAAATGGCAACAGCACTACCCAGGCTTGTGCTGCATGCAAGTACCAACGCAGAAAGTGTGCACCCGATTGCATTCTTGCACCTTACTTCCCTCACGAACGCCAACGCCAGTTCCTCAACGCGCACAAGTTGTTTGGCGTGAGCAACATCACCAAGATCATCAAGCTTCTCAGCCCTCAGGACAAGGACCAAGCCATGCGTACCATCATTTACCAATCCGACATGCGCGCTACAGATCCAGTTGGTGGTTGCTATAGGTACATTCTCGATCTCCAGGCCCAGATCGAGTACTATAGGGCGGAACTCGAACTCGTCCTTCAACAACTCGCCATTTTTAGAGCTCAGGCTCAACAACAACAACAACAACAACAACAACAACATGGTATCTATGCTCCAAACAACGTTAATATCGCTGTCAATGGCGATGGCGAGGTTTTGAATGCTGATCCAATGGGATTGTACGACCAGCAACAACATTATCAGTGTCTTCAGCCACAACAACAGGAGCAGTATGCTATGATGCATGAAAATGGTCATGGAAGCCAAAACAGCGACGGCACTGCTTTCCAGGAACAAATAAACACGTGGGCTGTGCAGAACACTGCTGTGTCTCTTTCTTCGTTGTCGTTGCAAGGGCAGGGTAGTAATGTTAGCGATGGGTATGATCACAAGCCGGTGCTGGGGATTGACATGGATTCTGATGAGAGAAGTGAGTTAGGGTTCGAGTCTGAAGAATTAGTCCATCGCAGTGATGAAGCAGTTTTATTTAAGATAGACGATGCAGAAATTAAAGCGGAGGCTGATCACTGCATGCAACAAGCTCAAGACCATGACCTGAAAGGTGCAGCAACATCGTTTACTCTCACAAATTGTACTTGCTGA
Predicted protein sequences of Glyma08g20550
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g20550.2 sequence type=predicted peptide gene model=Glyma08g20550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MQPKSHTPFFVPPQKAMNNNNPNNNSNRISSPRNGNSTTQACAACKYQRRKCAPDCILAPYFPHERQRQFLNAHKLFGVSNITKIIKLLSPQDKDQAMRTIIYQSDMRATDPVGGCYRYILDLQAQIEYYRAELELVLQQLAIFRAQAQQQQQQQQQQHGIYAPNNVNIAVNGDGEVLNADPMGLYDQQQHYQCLQPQQQEQYAMMHENGHGSQNSDGTAFQEQINTWAVQNTAVSLSSLSLQGQGSNVSDGYDHKPVLGIDMDSDERSELGFESEELVHRSDEAVLFKIDDAEIKAEADHCMQQAQDHDLKGAATSFTLTNCTC*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
