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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G55080 | AT | Annotation by Michelle Graham. TAIR10: MED9; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29580.1); Has 67203 Blast hits to 25757 proteins in 1293 species: Archae - 12; Bacteria - 4374; Metazoa - 24340; Fungi - 7940; Plants - 5927; Viruses - 273; Other Eukaryotes - 24337 (source: NCBI BLink). | chr1:20553121-20554174 REVERSE LENGTH=244 | SoyBase | E_val: 1.00E-39 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016592 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mediator complex | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1KUT8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUT8_SOYBN | SoyBase | E_val: 8.00E-123 | ISS |
| UniRef100_Q8RWA2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mediator of RNA polymerase II transcription subunit 9 n=1 Tax=Arabidopsis thaliana RepID=MED9_ARATH | SoyBase | E_val: 5.00E-37 | ISS |
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Glyma08g20540 not represented in the dataset |
Glyma08g20540 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g01151 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g192500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g20540.4 sequence type=transcript gene model=Glyma08g20540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATACTATAATTTTGTAAGAACTAGGCATGGTCTCAGTCATTCTCGGCCTACCGCCGCCACAAAATGATCTCAATTTATGGGTGGATAAAATTCTACGGCAATTAATTGCTTCCTTCTTTGGTTTCGATTCTGAGCCTAAGACAGAAGCCAATCTATTCTCTAAGAAAAAAATTGAGGAAAATTTAGAGTTCACTAGTACACATCAAGTTGAAGTTCCAAAGAAAGAAGGAATCAAACCTGGAATTAGAAAAAAAAAAGGAGATGCAAGCGATGAATGAAAACTGAAACCTTAAAATGATATGAGAAGAGGGAAAGAGAATAGAATGGAAGCAGTGAATCTATAGTCTCTGGGATGTTTCCCTTAACAAATAAGGGGGCACTGTATGTTTGATAACCGGGGCAAAAACGTCCAATTTGCCAAATCCGCACCGGCCCAATCCAGTTTAATCTGATCCACATTTATTACCCGTTTAAGGATCCAAAATCCATTTTAACATACGGATTTTGGAAAACTAGGGAAAAATGTATCTGCTCCCGTGGCATTGTAGGGACTAGGGATTGTTTCACAGAACACCTCTGAAATTCAAATCCCTTTTTTTTGTTTGATATTAATCTATGGTAGGATATAGAATCTGAAGCTGAAAAAAGGGGTTAATTGTTTTGCAGAATCAGTATAATTGTAGAGAGCGAGATGGATCACTATGGTTCTTCTGGAGGAAGCTGGACAATGATCCCAACCCACAATTCCCAATCCCAATCGAACCAGGACCCTAACCTCTTTCTGCAACAACAACAACAGTTTCTCCAGTCACAACCTTTTCAGCAAGCACTAGCGCCTCAATCTCCATTTCAACAGCAGCAGCAGCAGCGTCTTCTACAGCAACAGCAACAACAACAACAGCCGCAGAACCTTCACCAGTCACTGGCCTCTCACTACCATCTCTTACACTTGGTGGAGAATTTGGCTGAGGTTATCGAACATGGAACCCCGGATCAGCCGTCTGATGCATTGATCAATGAATCGAGCAACCACTTTGAGAAGTGCCTGCAGCTGCTAAACTCAATCTCTGGCTCCATTAGCACCAAGGCTATGACAGTTGAGGGACAGAAGAAGAAGCTAGAGGAAAGTGAGCAATTGCTAAATCAGCGAAGAGACTTGATTGGCAATTACAGAAAATCTGTGGAGGATCTTGTTAGGTCTGAGCCAGTAGAGAATGTTGTGCTTTAGATAGATCTCACTGTAGACAAGTGCTTTGAATTTCTCCATTCCCAGAACATCTTGGGATTATTTATGTAAAACTACCTTGGAGTATGCCATGAATTTATAATTCAATAGATATTCTGCAAGTTACTTATCATGTTTTGGCTCCTATCAAGGTTTCTATATCCATGAAACAAGTTCAAAGTAGGTTTAAATCAATGACACATCTTTACTGTTAGCTTCTGTTGCCTGTATTAGAGAGGCAGGGCATTCAATTAAGAGAAAACTCTGGCAATTTGGAGAAATGTAAAGTTACTGATAGATGATGTAAAAATGGTTGCCCCCCCTGCATTGTATTTGGGTCATTTATCTATAATGTTGGATTACCAGCTGTGGATTGAGTATTTTCGTTGATATTGAATGCATAATAATGTCATTCATTACACTAACCAAAATTGTTTAGAGAACATTGAATGTTGCCTCTAGCCCCAAAGGAATG >Glyma08g20540.5 sequence type=transcript gene model=Glyma08g20540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AACATACGGATTTTGGAAAACTAGGGAAAAATGTATCTGCTCCCGTGGCATTAATCAGTATAATTGTAGAGAGCGAGATGGATCACTATGGTTCTTCTGGAGGAAGCTGGACAATGATCCCAACCCACAATTCCCAATCCCAATCGAACCAGGACCCTAACCTCTTTCTGCAACAACAACAACAGTTTCTCCAGTCACAACCTTTTCAGCAAGCACTAGCGCCTCAATCTCCATTTCAACAGCAGCAGCAGCAGCGTCTTCTACAGCAACAGCAACAACAACAACAGCCGCAGAACCTTCACCAGTCACTGGCCTCTCACTACCATCTCTTACACTTGGTGGAGAATTTGGCTGAGGTTATCGAACATGGAACCCCGGATCAGCCGTCTGATGCATTGATCAATGAATCGAGCAACCACTTTGAGAAGTGCCTGCAGCTGCTAAACTCAATCTCTGGCTCCATTAGCACCAAGGCTATGACAGTTGAGGGACAGAAGAAGAAGCTAGAGGAAAGTGAGCAATTGCTAAATCAGCGAAGAGACTTGATTGGCAATTACAGAAAATCTGTGGAGGATCTTGTTAGGTCTGAGCCAGTAGAGAATGTTGTGCTTTAGATAGATCTCACTGTAGACAAGTGCTTTGAATTTCTCCATTCCCAGAACATCTTGGGATTATTTATGTAAAACTACCTTGGAGTATGCCATGAATTTATAATTCAATAGATATTCTGCAAGTTACTTATCATGTTTTGGCTCCTATCAAGGTTTCTATATCCATGAAACAAGTTCAAAGTAGGTTTAAATCAATGACACATCTTTACTGTTAGCTTCTGTTGCCTGTATTAGAGAGGCAGGGCATTCAATTAAGAGAAAACTCTGGCAATTTGGAGAAATGTAAAGTTACTGATAGATGATGTAAAAATGGTTGCCCCCCCTGCATTGTATTTGGGTCATTTATCTATAATGTTGGATTACCAGCTGTGGATTGAGTATTTTCGTTGATATTGAATGCATAATAATGTCATTCATTACACTAACCAAAATTGTTTAGAGAAC
>Glyma08g20540.1 sequence type=CDS gene model=Glyma08g20540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCACTATGGTTCTTCTGGAGGAAGCTGGACAATGATCCCAACCCACAATTCCCAATCCCAATCGAACCAGGACCCTAACCTCTTTCTGCAACAACAACAACAGTTTCTCCAGTCACAACCTTTTCAGCAAGCACTAGCGCCTCAATCTCCATTTCAACAGCAGCAGCAGCAGCGTCTTCTACAGCAACAGCAACAACAACAACAGCCGCAGAACCTTCACCAGTCACTGGCCTCTCACTACCATCTCTTACACTTGGTGGAGAATTTGGCTGAGGTTATCGAACATGGAACCCCGGATCAGCCGTCTGATGCATTGATCAATGAATCGAGCAACCACTTTGAGAAGTGCCTGCAGCTGCTAAACTCAATCTCTGGCTCCATTAGCACCAAGGCTATGACAGTTGAGGGACAGAAGAAGAAGCTAGAGGAAAGTGAGCAATTGCTAAATCAGCGAAGAGACTTGATTGGCAATTACAGAAAATCTGTGGAGGATCTTGTTAGGTCTGAGCCAGTAGAGAATGTTGTGCTTTAG >Glyma08g20540.4 sequence type=CDS gene model=Glyma08g20540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCACTATGGTTCTTCTGGAGGAAGCTGGACAATGATCCCAACCCACAATTCCCAATCCCAATCGAACCAGGACCCTAACCTCTTTCTGCAACAACAACAACAGTTTCTCCAGTCACAACCTTTTCAGCAAGCACTAGCGCCTCAATCTCCATTTCAACAGCAGCAGCAGCAGCGTCTTCTACAGCAACAGCAACAACAACAACAGCCGCAGAACCTTCACCAGTCACTGGCCTCTCACTACCATCTCTTACACTTGGTGGAGAATTTGGCTGAGGTTATCGAACATGGAACCCCGGATCAGCCGTCTGATGCATTGATCAATGAATCGAGCAACCACTTTGAGAAGTGCCTGCAGCTGCTAAACTCAATCTCTGGCTCCATTAGCACCAAGGCTATGACAGTTGAGGGACAGAAGAAGAAGCTAGAGGAAAGTGAGCAATTGCTAAATCAGCGAAGAGACTTGATTGGCAATTACAGAAAATCTGTGGAGGATCTTGTTAGGTCTGAGCCAGTAGAGAATGTTGTGCTTTAG >Glyma08g20540.5 sequence type=CDS gene model=Glyma08g20540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCACTATGGTTCTTCTGGAGGAAGCTGGACAATGATCCCAACCCACAATTCCCAATCCCAATCGAACCAGGACCCTAACCTCTTTCTGCAACAACAACAACAGTTTCTCCAGTCACAACCTTTTCAGCAAGCACTAGCGCCTCAATCTCCATTTCAACAGCAGCAGCAGCAGCGTCTTCTACAGCAACAGCAACAACAACAACAGCCGCAGAACCTTCACCAGTCACTGGCCTCTCACTACCATCTCTTACACTTGGTGGAGAATTTGGCTGAGGTTATCGAACATGGAACCCCGGATCAGCCGTCTGATGCATTGATCAATGAATCGAGCAACCACTTTGAGAAGTGCCTGCAGCTGCTAAACTCAATCTCTGGCTCCATTAGCACCAAGGCTATGACAGTTGAGGGACAGAAGAAGAAGCTAGAGGAAAGTGAGCAATTGCTAAATCAGCGAAGAGACTTGATTGGCAATTACAGAAAATCTGTGGAGGATCTTGTTAGGTCTGAGCCAGTAGAGAATGTTGTGCTTTAG
>Glyma08g20540.1 sequence type=predicted peptide gene model=Glyma08g20540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDHYGSSGGSWTMIPTHNSQSQSNQDPNLFLQQQQQFLQSQPFQQALAPQSPFQQQQQQRLLQQQQQQQQPQNLHQSLASHYHLLHLVENLAEVIEHGTPDQPSDALINESSNHFEKCLQLLNSISGSISTKAMTVEGQKKKLEESEQLLNQRRDLIGNYRKSVEDLVRSEPVENVVL* >Glyma08g20540.4 sequence type=predicted peptide gene model=Glyma08g20540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDHYGSSGGSWTMIPTHNSQSQSNQDPNLFLQQQQQFLQSQPFQQALAPQSPFQQQQQQRLLQQQQQQQQPQNLHQSLASHYHLLHLVENLAEVIEHGTPDQPSDALINESSNHFEKCLQLLNSISGSISTKAMTVEGQKKKLEESEQLLNQRRDLIGNYRKSVEDLVRSEPVENVVL* >Glyma08g20540.5 sequence type=predicted peptide gene model=Glyma08g20540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDHYGSSGGSWTMIPTHNSQSQSNQDPNLFLQQQQQFLQSQPFQQALAPQSPFQQQQQQRLLQQQQQQQQPQNLHQSLASHYHLLHLVENLAEVIEHGTPDQPSDALINESSNHFEKCLQLLNSISGSISTKAMTVEGQKKKLEESEQLLNQRRDLIGNYRKSVEDLVRSEPVENVVL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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