Glyma08g20510 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g20510

Feature Type:	gene_model
Chromosome:	Gm08
Start:	15526273
stop:	15531069
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g20510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G13800	AT	Annotation by Michelle Graham. TAIR10: Metallo-hydrolase/oxidoreductase superfamily protein \| chr3:4538879-4541366 FORWARD LENGTH=361	SoyBase	E_val: 2.00E-170	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
PTHR12553	Panther	ELAC RELATED	JGI		ISS
PTHR12553:SF12	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00753	PFAM	Metallo-beta-lactamase superfamily	JGI		ISS
UniRef100_G7LHH5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hydrolase-like protein n=2 Tax=Medicago truncatula RepID=G7LHH5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00023389C1	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023389C1 related cluster n=1 Tax=unknown RepID=UPI00023389C1	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g20510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g20510

Paralog	Evidence	Comments
Glyma07g01110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g20510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g192200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g20510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g20510

Limit To All Plant Sequences

>Glyma08g20510.2   sequence type=CDS   gene model=Glyma08g20510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGTTGCATCCATTCGTCTTCTTCCTTCTCCATTCCTCTCTTTCGCGCCTCGTTTCTCTCCATATTCATATTCATGGCGCTGCCGTCCCTCTTCCACCATTCCCTTTTCTTCCATCCACTCCAAAGCTTCTACTAAGGGAGATGGTGGAGTAGTGGAATTTGGTGGTGATCAAACAGAGCTTATATTTTTGGGGACTGGAACCAGTGAAGGGGTTCCACGTGTCAGCTGCTTGACTAATCCTTTACACAAATGTGAGGTGTGTTCAAAAGCTGCTCAACCGGGTAATAAGAATAGGAGACTTAACACAAGCATCCTCATTCGTCACCCCGGTTCCTCAGGAACACACAATAATATTCTTATAGATGCTGGAAAATTTTTCTATCACAGTGCTCTCCGGTGGTTTCCTGCTTTTGGGATAAGAACAATTGATGCGGTCATTATTACTCATTCACATGCTGATGCAATCGGAGGTCTTGATGATCTTAGAGATTGGACAAACAATGTTCAGCCTCATATTCCAATATATGTAGCCAAGCGTGACTTTGAGGTGATGACAAAGACCCATTATTATTTAGTAGATACTAGTGTTATCTTACCTGGTGCCCAAGTCTCAGAGTTGCAATTCAATATCGTATCAGAAGAACCATTTTTTGTACATGGACTGAAGTTCACCCCATTACCAGTGTGGCACGGCCAGAATTATCGGTCCCTTGGTTTTCGTTTTGGTAATATATGTTACATTAGTGATGTCAGCGACATTCCTGAAGAAACATATCCACTTCTGAAGGACTGTGAAATTCTAATCCTGGATGCTTTGAGGCCTGATTGCTCTACTTCTACACATTTTGGACTTCAAAGGGCCTTGGACGAAGTGCGAAAAATTCAACCCAAAAGAACACTTTTTACCGGTATGATGCATCTGATGGATCATGAAGAAGTGAATGACTCCCTTGCGAAGCTATTGGAGTCTGAAGGCCTTGATGCACAACTGAGCTATGACGGGCTTCGTATACCAATTAGACTCTAG

Predicted protein sequences of Glyma08g20510

Limit To All Plant Sequences

>Glyma08g20510.2   sequence type=predicted peptide   gene model=Glyma08g20510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVASIRLLPSPFLSFAPRFSPYSYSWRCRPSSTIPFSSIHSKASTKGDGGVVEFGGDQTELIFLGTGTSEGVPRVSCLTNPLHKCEVCSKAAQPGNKNRRLNTSILIRHPGSSGTHNNILIDAGKFFYHSALRWFPAFGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQPHIPIYVAKRDFEVMTKTHYYLVDTSVILPGAQVSELQFNIVSEEPFFVHGLKFTPLPVWHGQNYRSLGFRFGNICYISDVSDIPEETYPLLKDCEILILDALRPDCSTSTHFGLQRALDEVRKIQPKRTLFTGMMHLMDHEEVNDSLAKLLESEGLDAQLSYDGLRIPIRL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain