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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G13790 | AT | Annotation by Michelle Graham. TAIR10: Glycosyl hydrolases family 32 protein | chr3:4533084-4535831 REVERSE LENGTH=584 | SoyBase | E_val: 0 | ISS |
| GO:0002679 | GO-bp | Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response | SoyBase | N/A | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0006865 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid transport | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0010167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to nitrate | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0015706 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrate transport | SoyBase | N/A | ISS |
| GO:0080167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to karrikin | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004553 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds | SoyBase | N/A | ISS |
| GO:0004564 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: beta-fructofuranosidase activity | SoyBase | N/A | ISS |
| KOG0228 | KOG | Beta-fructofuranosidase (invertase) | JGI | ISS | |
| PF00251 | PFAM | Glycosyl hydrolases family 32 N-terminal domain | JGI | ISS | |
| PF08244 | PFAM | Glycosyl hydrolases family 32 C terminal | JGI | ISS | |
| UniRef100_Q7XA49 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Beta-fructofuranosidase n=1 Tax=Glycine max RepID=Q7XA49_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023392C2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023392C2 related cluster n=1 Tax=unknown RepID=UPI00023392C2 | SoyBase | E_val: 0 | ISS |
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Glyma08g20480 not represented in the dataset |
Glyma08g20480 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g191900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g20480.3 sequence type=transcript gene model=Glyma08g20480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTTTAATCAGTAAAACAAACACAGTTTTATATTAAAAAAAAAATGTCCTTACTTGGAGTCGGGGCTTTTGGGTAGGACCAATGAGATATGGAGGACTTTATCATGTGTTCTATCAATACAATCCTAGAGGTGCAACTTGGGGAAATATTGTGTGGGCACATTCAGTGTCAAAGGATCTTGTGAACTGGACCCCACTAGATCCTGCCCTATTTCCATCTCAACCGTCCGATATAAATGGTTGTTGGTCAGGATCAGCCACACTACTTCCTGGGAACAAACCAGCCATTTTGTACACTGGAATTGACTCCATGAATCGCCAAGTCCAAAATTTGGCCCAACCCAAAAATTTGTCTGACCCATTTCTTAGGGAATGGGTTAAATCACCCAAAAATCCTCTAATGGAACCAACTAGTGCTAACAACATTGATTCAAGTTCATTCAGAGACCCTACCACTGCTTGGCTAGGCAAAGATGGGCAATGGAGAGTACTTGTTGGAAGCCTAAGAGAAACTAGTGGAACGGCACTTTTGTACAAGAGCAAAGATTTTGTTGATTGGGTTCAAGCTGAACAACCTTTACATTCAACCCTTGGAAGTGGAATGTGGGAGTGCCCTGATTTTTTTCCGGTTTTGAGTAATGGCCAATTGGGTGTTGACACATCATTGAATGGTGACCATGTTAGGCATGTGCTCAAGGCTAGCTTGAGTGCTAAACAACATGATTACTATATGATTGGGAGTTACAATGCTACCAAAGATGTGTTTATCCCGGATAACGGGACTAATCAATTTGTTTTAAGTTATGATTATGGAAAATACTATGCCTCAAAAACGTTCTTTGATGATGGAAAGAAGAGAAGGATTTTGTTAGCATGGGTCAGTGAATCATCAAGTAGTGCCGATGATAAGAAGAAAGGATGGTCTGGAATTTATACAATTCCAAGGACTATATGGCTGCACAAGTCTGGTAAACAGTTGGTACAGTGGCCAGTGGTGGAAATTGAAAAGCTACGTGCATACCCAGTCAACTTGCCCCCACAAGTGCTAAAAGGAGGCCAATTGCTTCATATTAATGGTGTCACAGCAACACAGGCTGATATTGAAATTTCATTTAAAGTGAATAAGTTGAAAAAGGCTGAAGTATTTCCAAATTCTGTGTAAAAATGGTTCATCCATCATAAGTGAACTGGGCCCATTTGGTCTGCTAGTTTTTGCTTCAGAGGGATTGCAAGAGTACACATCAATTTCCTTCAGAATATTCAGACACCAACACAAATATTTGGTACTCTTGTGCAGTGACCAAAGCAGGTCTTCCTTAAACAAAGACAATGATTTGGCCACTTATGGAACTTTTGTGGACGTGGACCCTCTTCATGAGAAGCTGTCGTTGAGAACCTTGATTGATCATTCTGTGGTGGAGAGTTTTGGAGGAGAAGGAAGGGCTTGCATCACAGCCCGAGTTTATCCCACATTGGCAATCAATGATAAAGCACAAATATATGCTTTCAATAATGGAACAGTTGATGTCAAGATCACAAAACTGAATGCTTGGAGCATGAAGAAAGCTCAAATAAATCGAAACTAAGTGGAATGCATAGAAGAAACCACAAATAAATTGAAACTAAGCACAAATAAATTATGAAACTAGTCATTGATGATGTTGAAATTTGCAAAAAGAGAGACGGTGTCCCTAAAGAGACTCATCTATGGTTATAATAAATTTTTTCACGTTATTACTATCTTGCAGTTGTTTTTTCCTATTATTTTGCAAAAGTGTGAA
>Glyma08g20480.2 sequence type=CDS gene model=Glyma08g20480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTATGTCTACTATTTGGCTGTTAACTCTCTTTTCTGTCATTTATGGCAATTCAGCTTCCCATTATCTTTATAGAAATCTTCAGAGTCTATCTTCTGAATATTCCTATGATCAACCTTACAGAACTGCTTATCATTTTCAACCAGCTTGGAATTGGATAAATGATCCCAATGGACCAATGAGATATGGAGGACTTTATCATGTGTTCTATCAATACAATCCTAGAGGTGCAACTTGGGGAAATATTGTGTGGGCACATTCAGTGTCAAAGGATCTTGTGAACTGGACCCCACTAGATCCTGCCCTATTTCCATCTCAACCGTCCGATATAAATGGTTGTTGGTCAGGATCAGCCACACTACTTCCTGGGAACAAACCAGCCATTTTGTACACTGGAATTGACTCCATGAATCGCCAAGTCCAAAATTTGGCCCAACCCAAAAATTTGTCTGACCCATTTCTTAGGGAATGGGTTAAATCACCCAAAAATCCTCTAATGGAACCAACTAGTGCTAACAACATTGATTCAAGTTCATTCAGAGACCCTACCACTGCTTGGCTAGGCAAAGATGGGCAATGGAGAGTACTTGTTGGAAGCCTAAGAGAAACTAGTGGAACGGCACTTTTGTACAAGAGCAAAGATTTTGTTGATTGGGTTCAAGCTGAACAACCTTTACATTCAACCCTTGGAAGTGGAATGTGGGAGTGCCCTGATTTTTTTCCGGTTTTGAGTAATGGCCAATTGGGTGTTGACACATCATTGAATGGTGACCATGTTAGGCATGTGCTCAAGGCTAGCTTGAGTGCTAAACAACATGATTACTATATGATTGGGAGTTACAATGCTACCAAAGATGTGTTTATCCCGGATAACGGGACTAATCAATTTGTTTTAAGTTATGATTATGGAAAATACTATGCCTCAAAAACGTTCTTTGATGATGGAAAGAAGAGAAGGATTTTGTTAGCATGGGTCAGTGAATCATCAAGTAGTGCCGATGATAAGAAGAAAGGATGGTCTGGAATTTATACAATTCCAAGGACTATATGGCTGCACAAGTCTGGTAAACAGTTGGTACAGTGGCCAGTGGTGGAAATTGAAAAGCTACGTGCATACCCAGTCAACTTGCCCCCACAAGTGCTAAAAGGAGGCCAATTGCTTCATATTAATGGTGTCACAGCAACACAGTATTTCCAAATTCTGTGTAAAAATGGTTCATCCATCATAAGTGAACTGGGCCCATTTGGTCTGCTAGTTTTTGCTTCAGAGGGATTGCAAGAGTACACATCAATTTCCTTCAGAATATTCAGACACCAACACAAATATTTGGTACTCTTGTGCAGTGACCAAAGCAGGTCTTCCTTAAACAAAGACAATGATTTGGCCACTTATGGAACTTTTGTGGACGTGGACCCTCTTCATGAGAAGCTGTCGTTGAGAACCTTGATTGATCATTCTGTGGTGGAGAGTTTTGGAGGAGAAGGAAGGGCTTGCATCACAGCCCGAGTTTATCCCACATTGGCAATCAATGATAAAGCACAAATATATGCTTTCAATAATGGAACAGTTGATGTCAAGATCACAAAACTGAATGCTTGGAGCATGAAGAAAGCTCAAATAAATCGAAACTAA >Glyma08g20480.3 sequence type=CDS gene model=Glyma08g20480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGATATGGAGGACTTTATCATGTGTTCTATCAATACAATCCTAGAGGTGCAACTTGGGGAAATATTGTGTGGGCACATTCAGTGTCAAAGGATCTTGTGAACTGGACCCCACTAGATCCTGCCCTATTTCCATCTCAACCGTCCGATATAAATGGTTGTTGGTCAGGATCAGCCACACTACTTCCTGGGAACAAACCAGCCATTTTGTACACTGGAATTGACTCCATGAATCGCCAAGTCCAAAATTTGGCCCAACCCAAAAATTTGTCTGACCCATTTCTTAGGGAATGGGTTAAATCACCCAAAAATCCTCTAATGGAACCAACTAGTGCTAACAACATTGATTCAAGTTCATTCAGAGACCCTACCACTGCTTGGCTAGGCAAAGATGGGCAATGGAGAGTACTTGTTGGAAGCCTAAGAGAAACTAGTGGAACGGCACTTTTGTACAAGAGCAAAGATTTTGTTGATTGGGTTCAAGCTGAACAACCTTTACATTCAACCCTTGGAAGTGGAATGTGGGAGTGCCCTGATTTTTTTCCGGTTTTGAGTAATGGCCAATTGGGTGTTGACACATCATTGAATGGTGACCATGTTAGGCATGTGCTCAAGGCTAGCTTGAGTGCTAAACAACATGATTACTATATGATTGGGAGTTACAATGCTACCAAAGATGTGTTTATCCCGGATAACGGGACTAATCAATTTGTTTTAAGTTATGATTATGGAAAATACTATGCCTCAAAAACGTTCTTTGATGATGGAAAGAAGAGAAGGATTTTGTTAGCATGGGTCAGTGAATCATCAAGTAGTGCCGATGATAAGAAGAAAGGATGGTCTGGAATTTATACAATTCCAAGGACTATATGGCTGCACAAGTCTGGTAAACAGTTGGTACAGTGGCCAGTGGTGGAAATTGAAAAGCTACGTGCATACCCAGTCAACTTGCCCCCACAAGTGCTAAAAGGAGGCCAATTGCTTCATATTAATGGTGTCACAGCAACACAGGCTGATATTGAAATTTCATTTAAAGTGAATAAGTTGAAAAAGGCTGAAGTATTTCCAAATTCTGTGTAA
>Glyma08g20480.2 sequence type=predicted peptide gene model=Glyma08g20480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIMSTIWLLTLFSVIYGNSASHYLYRNLQSLSSEYSYDQPYRTAYHFQPAWNWINDPNGPMRYGGLYHVFYQYNPRGATWGNIVWAHSVSKDLVNWTPLDPALFPSQPSDINGCWSGSATLLPGNKPAILYTGIDSMNRQVQNLAQPKNLSDPFLREWVKSPKNPLMEPTSANNIDSSSFRDPTTAWLGKDGQWRVLVGSLRETSGTALLYKSKDFVDWVQAEQPLHSTLGSGMWECPDFFPVLSNGQLGVDTSLNGDHVRHVLKASLSAKQHDYYMIGSYNATKDVFIPDNGTNQFVLSYDYGKYYASKTFFDDGKKRRILLAWVSESSSSADDKKKGWSGIYTIPRTIWLHKSGKQLVQWPVVEIEKLRAYPVNLPPQVLKGGQLLHINGVTATQYFQILCKNGSSIISELGPFGLLVFASEGLQEYTSISFRIFRHQHKYLVLLCSDQSRSSLNKDNDLATYGTFVDVDPLHEKLSLRTLIDHSVVESFGGEGRACITARVYPTLAINDKAQIYAFNNGTVDVKITKLNAWSMKKAQINRN* >Glyma08g20480.3 sequence type=predicted peptide gene model=Glyma08g20480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRYGGLYHVFYQYNPRGATWGNIVWAHSVSKDLVNWTPLDPALFPSQPSDINGCWSGSATLLPGNKPAILYTGIDSMNRQVQNLAQPKNLSDPFLREWVKSPKNPLMEPTSANNIDSSSFRDPTTAWLGKDGQWRVLVGSLRETSGTALLYKSKDFVDWVQAEQPLHSTLGSGMWECPDFFPVLSNGQLGVDTSLNGDHVRHVLKASLSAKQHDYYMIGSYNATKDVFIPDNGTNQFVLSYDYGKYYASKTFFDDGKKRRILLAWVSESSSSADDKKKGWSGIYTIPRTIWLHKSGKQLVQWPVVEIEKLRAYPVNLPPQVLKGGQLLHINGVTATQADIEISFKVNKLKKAEVFPNSV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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