Glyma08g20430 - SoyBase

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Report for Sequence Feature Glyma08g20430

Feature Type:	gene_model
Chromosome:	Gm08
Start:	15453660
stop:	15456579
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g20430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G72670	AT	Annotation by Michelle Graham. TAIR10: IQ-domain 8 \| chr1:27356898-27358657 REVERSE LENGTH=414	SoyBase	E_val: 2.00E-83	ISS
GO:0000226	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization	SoyBase	N/A	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PTHR13140	Panther	MYOSIN	JGI		ISS
PTHR13140:SF84	Panther	MYOSIN VIII	JGI		ISS
PF00612	PFAM	IQ calmodulin-binding motif	JGI		ISS
UniRef100_G7IS48	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: IQ domain-containing protein n=1 Tax=Medicago truncatula RepID=G7IS48_MEDTR	SoyBase	E_val: 6.00E-99	ISS
UniRef100_I1KUS5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUS5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g20430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g20430

Paralog	Evidence	Comments
Glyma07g01040	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g20430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g191400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g20430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g20430

Limit To All Plant Sequences

>Glyma08g20430.1   sequence type=CDS   gene model=Glyma08g20430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGGTTCAGGAAGATGGCTTAAGTCGCTCATTTCTCTCAGAAGGCCCTCCCCAACTGATCAAGAGAAGGGTGGTGGCAAGAGTAAGAGACAGTGGAAGCTATGGAAGAGCACTTCAGAAGGGTTTGGGATTGGATCATCAATGCATAAGGGGCAAGGTGGTGGTGGTTCCTTTGTGGTAGATGGTGGAGCATTTGCTGCTGCTTTGGCTGCTGTGGTCAGAACTCCACTCAAAGACTTCATGGTCATCAAGCAGGAATGGGCTGCCATTCGTATCCAGGCAGTGTTTCGAGGTTTCTTGGCAAGACGAGCTTTGAGGGCCCTGAAGGCAGTGGTGAGGTTGCAAGCTATATTTCGTGGTTGGCAAGTGAGAAAGCAAGCAGCTGTTACTCTAAGGTGCATGCAGGCTCTTGTGCGAGTTCAAGCACGTGTCAAGGCAAGGAATGTTGGGAACTCTCAAGAAGGGAAATATGCACGGTGCAATGAAGCTGATCCTGTTAAGCAAGCTGAGCAAGGGTGGTGTGACATTCCAAGAACTGCGGAAGAGGCAAAATTACAAATGAGGCAGGAAGGAGCAATTAAGAGGGATAGAACAAAGGCATATTCTCAGTCTAAGAAGAAATTGACAGCGAGTCCAAACTCAAGAGCTTCTAAGTCAGTGATTCCTCTCAAGAACCGCAAGCTAGACAGAAAGAGCTCGGGATGGAACATGCTAGATCGCTGGATGGCTGCAAAGCCATGGGAGAGCAGGTCAATGGTAGAGATGTATTTGGACTCACCTGTCATGACTCCAGTGACCAGTAAAAGTGATCATCTTGTTCTTCCCTTTAATTCGAATCAACAAATTGGCACGGTCAAAGCAAGAAGGAATGGTGTGACAACTAGGATTTCAACTAAATCTCTTACAACTAGTCAATCAACTCCATCATCTTCAGCCATAAGCTCTGAATGCATGTATGATGATAGCCCTATGTCAACTTCATGCACATCTGGATCCCCAGCTCGACCATCTAACAACAATGTTACAGTGGAACCAACAGAGGAAACAAATGCTTGTAAACCAAGCTACATGAATCTGACAGCATCAACCAAAGCTAAACTGAAACCCTGTAGGTGTTTTTCTCAGAATTCAAAGACAATCTTTATGGATGATTGTGTGTCACTAAGTGGAGTTACTAGAAGCAGTTCTGGTTCCTACCCTTCTGCTAATACATGGAAGAATCTCTATGCAACACCTCTAAGAACAAGTTATCAAAGACAATAG

Predicted protein sequences of Glyma08g20430

Limit To All Plant Sequences

>Glyma08g20430.1   sequence type=predicted peptide   gene model=Glyma08g20430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGSGRWLKSLISLRRPSPTDQEKGGGKSKRQWKLWKSTSEGFGIGSSMHKGQGGGGSFVVDGGAFAAALAAVVRTPLKDFMVIKQEWAAIRIQAVFRGFLARRALRALKAVVRLQAIFRGWQVRKQAAVTLRCMQALVRVQARVKARNVGNSQEGKYARCNEADPVKQAEQGWCDIPRTAEEAKLQMRQEGAIKRDRTKAYSQSKKKLTASPNSRASKSVIPLKNRKLDRKSSGWNMLDRWMAAKPWESRSMVEMYLDSPVMTPVTSKSDHLVLPFNSNQQIGTVKARRNGVTTRISTKSLTTSQSTPSSSAISSECMYDDSPMSTSCTSGSPARPSNNNVTVEPTEETNACKPSYMNLTASTKAKLKPCRCFSQNSKTIFMDDCVSLSGVTRSSSGSYPSANTWKNLYATPLRTSYQRQ*

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