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Report for Sequence Feature Glyma08g20390

Feature Type:gene_model
Chromosome:Gm08
Start:15427785
stop:15429585
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g20390
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G07750AT Annotation by Michelle Graham. TAIR10: 3'-5'-exoribonuclease family protein | chr3:2473486-2475218 FORWARD LENGTH=286 SoyBaseE_val: 5.00E-31ISS
GO:0000478GO-bp Annotation by Michelle Graham. GO Biological Process: endonucleolytic cleavage involved in rRNA processing SoyBaseN/AISS
GO:0001510GO-bp Annotation by Michelle Graham. GO Biological Process: RNA methylation SoyBaseN/AISS
GO:0006396GO-bp Annotation by Michelle Graham. GO Biological Process: RNA processing SoyBaseN/AISS
GO:0006626GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0000175GO-mf Annotation by Michelle Graham. GO Molecular Function: 3'-5'-exoribonuclease activity SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
PTHR11097Panther EXOSOME COMPLEX EXONUCLEASE (RIBOSOMAL RNA PROCESSING PROTEIN) JGI ISS
PTHR11097:SF5Panther EXOSOME COMPLEX EXONUCLEASE RRP42 (RIBOSOMAL RNA PROCESSING PROTEIN 42) JGI ISS
UniRef100_G7LDZ3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Exosome complex exonuclease RRP42 n=1 Tax=Medicago truncatula RepID=G7LDZ3_MEDTR SoyBaseE_val: 1.00E-31ISS
UniRef100_I1KUS2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUS2_SOYBN SoyBaseE_val: 1.00E-162ISS

Expression Patterns of Glyma08g20390
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g20390 not represented in the dataset
Glyma08g20390 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g20390 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g191000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g20390
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g20390
>Glyma08g20390.1   sequence type=CDS   gene model=Glyma08g20390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCAGCAAGAGTTAGAATGGGTGCCACAGATGTCATTGCCAGCGTTAAGGTGGTTAAAAATTAAAATGTTTGGATTGATTTCTTATTTCTTGACTTGTAATATCCTTTTGTTTAATACTATAACAAACAATTCTTTTAAATATATTGTTTTACTAACCATGATATGTTTGTTGGCTACACAAGTGCAGGCTGAACTTGGAAAGCCAAGCTTGTTGCAACCTCACAAAGGAAAAGTCTTTATATATATTGATTGCAGTTCAACAACAGAGCCAGCTTTTGAGGAATATTCTATTGGTAGAGGGGGTGATGAGTTGAGAGCAAAACTGTCAAATGCTCTTCAATGCTGTCTCTTGGGTGGTGCTGGAATTGATCTCTTGTCGCTTATTGTTGTCGAAGGAAAAATTTGTTGGGATCTTTACATAGATGGCTTGTTGTTAGTTCAGATGGAAATTTGTCACAAGTTTGTACCAAATAAAATTGAATTGATATTTGATTTCCATTCACTTCTTTTTATAAGTGATAATGAATACTGCATAATCTGCAGTCTTGATTTGTTTAGCACCTGCTCTATACAATCCCAAGTTTTTGTTTTGATTTTTTTTAAGAAGCCTTATAGTTTATACTTTATAGAGGTGTGCCACCAGGAAACTAGAATTCTAAGCAGAGTTTATGTCTAA
Predicted protein sequences of Glyma08g20390
>Glyma08g20390.1   sequence type=predicted peptide   gene model=Glyma08g20390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVQQELEWVPQMSLPALRWLKIKMFGLISYFLTCNILLFNTITNNSFKYIVLLTMICLLATQVQAELGKPSLLQPHKGKVFIYIDCSSTTEPAFEEYSIGRGGDELRAKLSNALQCCLLGGAGIDLLSLIVVEGKICWDLYIDGLLLVQMEICHKFVPNKIELIFDFHSLLFISDNEYCIICSLDLFSTCSIQSQVFVLIFFKKPYSLYFIEVCHQETRILSRVYV*






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