SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G36150 | AT | Annotation by Michelle Graham. TAIR10: Disease resistance protein (TIR-NBS-LRR class) family | chr4:17104776-17108711 FORWARD LENGTH=1179 | SoyBase | E_val: 2.00E-84 | ISS |
| GO:0001666 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hypoxia | SoyBase | N/A | ISS |
| GO:0006952 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
| GO:0031347 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of defense response | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0043531 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ADP binding | SoyBase | N/A | ISS |
| PTHR11017 | Panther | LEUCINE RICH REPEAT PROTEIN | JGI | ISS | |
| PTHR11017:SF20 | Panther | DISEASE RESISTANCE PROTEIN | JGI | ISS | |
| PF00931 | PFAM | NB-ARC domain | JGI | ISS | |
| UniRef100_G7LFZ8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: NBS-LRR resistance-like protein 4G n=1 Tax=Medicago truncatula RepID=G7LFZ8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KUR6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUR6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g20350 not represented in the dataset |
Glyma08g20350 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g190600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g20350.2 sequence type=CDS gene model=Glyma08g20350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGGGTATAGGTAAGACAACTGTTGCTAAGGTCGTATATGCCAAACTATGTTATGAATTTGAAAGTTGCTGCTTCTTGGAAAATGTAAGAGAACAATCGCAGAAGCATGGATTAAATTATTTACATGATAAGCTTCTCTTTGAGCTGCTGAAGGATGAACCTCCCCACAATTGCACAGCTGAAGTTGTAGGATCCAAATTTGTTTTGAGAAGGCTCGCAAATAAAAAAGTTTTGATTGTGCTTAATGATGTGAATGGTTTTGAGCAATTAGAATATCTGGCAAGAGAATTTGTCTGCTTGGGACCAGGTAGTAGAGTTATTATAACTACAAGAGATAAGCATTTGCTTATTCGAAGAGTTGATAAAATACATGAAGTCAAGGAATTGAACTTTCAAGATTCCCTTAAGCTTTTCAGCTTAGTTGCATTCAGAGACAGCAATCCTCAAATGGAATATATAGAGCTATCAGAAAGGGCAGTTGCATACACCAAGGGCAATCCATTAGCTCTGAAAGTGTTTGGCTTCACTTTTCCATTCCAAAATGTGTTACAATTGAGTTATGATGAATTAGATGATGCAGAGAAGAACATTTTTCTAGACATTGCATTCTTTTTTGAAGGGGAAAATAAAGATCATGTCATGAGGCTACTAGATGCCTGTGGCTTTTATGCAACTATCGGAATAGAAACCCTTCAAGATAAAGCTCTTGTAACTATTTCAAAAGACAATAAAATACACATGCATCAGCTGATTCAAGAAATGGGTTGGGAAATAGGAACTGATGCAATTGAAGGCATAATGTTAGACATGTCTCAAATTAGGGAACTTCACTTGAGTGCTGACATCTTCAAAAAGATGGCTAAACTAAGATTGCTCAAATTCTATTCTCCCTTCAATGGGAGATCATGCAAAATGCACCTTCCGACAGGTCTTGAGTCTCTTCCGCACAAATTAAGGTATCTTCATTGGAATGAATACCCTTTAATGTCCCTACCATCAACTTTCTCTGGCGAGATGCTTGTTCAGCTTCGCATGCCACGTAGCCATGATTTCGTCAACTTAAAGGGAATAGACCTTACTGCTTCCACGCAGTTGATGGAGCTCCCAGATTTATCCAAGGCAACAAAGCTTGAAATACAAAATATCGCCCACTGCGTAAATTTGAGTCATGTTCATCCCTCTATTTTATCACTTGACACCCTTGTTGATTTTGTTCTATATGGTTGCAAGAAACTCAAGAGTCTTCATTTAAGATCTGTCAAGTACATTGTGCTCAATGGTTGCTTCAATCTACAGGAATTTTCACTGACCTCAGGAGAAATAAACGTGTTGAACTTGAGAGGGACAGCAATCGAAACATTAGCATTTCCATCGTCACTCAAATATGTTCCAAAGGAGTTACCTTCTCTGACATGTCTTAGTGAACTGAATCTTCATAACTGCAGACAGCTTGACATGCCAAATTTGCATAACCTACTTGATGCTTTGCGTTCTGTCAGAAAGCTGATTTTGGACGAGTGTTGTAACTTTTCTCGAGTCCCTTGCAATATCAAGCATCTTTGGTGCCTTGAATACCTGTCCCTAAGGGATTGCACGGGGCTTCGATTTATACCTCAGCTTCCACCATCTGCTGAACATTTAGATGCCATCAACTGCACATCCCTGGAGACAGTGTTGCCTCTAATGCCTTTGAGACAACCGGGACAAAATGACATAAGCATTTCATTTGAAAACTGCTTGAAATTAGATGAACATTCAAAATATGGTATTACAGAATATGCCAACTTCACAATGAAGCATGTTGCATATGCAAATGACAGTGGTTCACATCATCTGAATAAAAGAGGTGGTGCTGTTTGTTTTCCAGGAAGCAAGGTGCCAGAGTGGTTTGAAAACAGGACAACAACACCGGCTTGTGTAACTGTTCAACTTCCTCCACCTTCCCACTTGTTGGGTTTTGCTTTCTGTGTTGTGCTTTCTCAGTTTCAATCAAATGCTAAGTATGAGTATCATCAGATAGTATGTCGATGGTGCTTGGAAGATGGTAAAAGTGTTGGATACATACGTAGATGGTTTTGTGAGCCTAAACACATTGGCTTGATTGGTATCAAAGAGTGTGGGGTCTGTCCAATATATACTTCAAAATATTACAGTTTCACAAACCACAGAGAACTGGACATGATGTTGGAACATAGAGCTAGAGAGATTACAATGGCGGTAGGAAACTCTGATGAGACAGAAAGCAATGGCATAAAAACTCAGGTGCAGAATCAAGAAAAAGACTCCTCCTGTTATTGCTTACCTGGTATGTATGTAACTTTCATTCTACTTCCAATCTAA
>Glyma08g20350.2 sequence type=predicted peptide gene model=Glyma08g20350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGGIGKTTVAKVVYAKLCYEFESCCFLENVREQSQKHGLNYLHDKLLFELLKDEPPHNCTAEVVGSKFVLRRLANKKVLIVLNDVNGFEQLEYLAREFVCLGPGSRVIITTRDKHLLIRRVDKIHEVKELNFQDSLKLFSLVAFRDSNPQMEYIELSERAVAYTKGNPLALKVFGFTFPFQNVLQLSYDELDDAEKNIFLDIAFFFEGENKDHVMRLLDACGFYATIGIETLQDKALVTISKDNKIHMHQLIQEMGWEIGTDAIEGIMLDMSQIRELHLSADIFKKMAKLRLLKFYSPFNGRSCKMHLPTGLESLPHKLRYLHWNEYPLMSLPSTFSGEMLVQLRMPRSHDFVNLKGIDLTASTQLMELPDLSKATKLEIQNIAHCVNLSHVHPSILSLDTLVDFVLYGCKKLKSLHLRSVKYIVLNGCFNLQEFSLTSGEINVLNLRGTAIETLAFPSSLKYVPKELPSLTCLSELNLHNCRQLDMPNLHNLLDALRSVRKLILDECCNFSRVPCNIKHLWCLEYLSLRDCTGLRFIPQLPPSAEHLDAINCTSLETVLPLMPLRQPGQNDISISFENCLKLDEHSKYGITEYANFTMKHVAYANDSGSHHLNKRGGAVCFPGSKVPEWFENRTTTPACVTVQLPPPSHLLGFAFCVVLSQFQSNAKYEYHQIVCRWCLEDGKSVGYIRRWFCEPKHIGLIGIKECGVCPIYTSKYYSFTNHRELDMMLEHRAREITMAVGNSDETESNGIKTQVQNQEKDSSCYCLPGMYVTFILLPI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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