Glyma08g20341 - SoyBase

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Report for Sequence Feature Glyma08g20341

Feature Type:	gene_model
Chromosome:	Gm08
Start:	15380534
stop:	15392163
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g20341

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G34450	AT	Annotation by Michelle Graham. TAIR10: HMG-box (high mobility group) DNA-binding family protein \| chr2:14527918-14529448 REVERSE LENGTH=152	SoyBase	E_val: 1.00E-11	ISS
GO:0006333	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin assembly or disassembly	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
UniRef100_B6U2G7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: HMG1/2-like protein n=1 Tax=Zea mays RepID=B6U2G7_MAIZE	SoyBase	E_val: 8.00E-10	ISS
UniRef100_UPI00023392A9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023392A9 related cluster n=1 Tax=unknown RepID=UPI00023392A9	SoyBase	E_val: 3.00E-14	ISS

Expression Patterns of Glyma08g20341

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g20341 not represented in the dataset	Glyma08g20341 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g20341 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g190500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g20341

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g20341

Limit To All Plant Sequences

>Glyma08g20341.2   sequence type=transcript   gene model=Glyma08g20341   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGAAGATGTCATTAACGTTACTTATATTTTGTTCGGTGAATTTTTAACGTTAGCATTTCTAGGACGCGTTCATTAATTTTTATATAAAAATTCAAAAATCACAGCCACCACCAGTATGGTCTGGTTTCGTCTTCAATGAAACTAGAATATGAGAGAGAGGAAGAAGAAGATAACAAAAGGGAAAATCAGCTTCTTGACTGGACTACTATGAAGGAGAAGGTTAAATACTATGATATAGCATCAGAAAAGCGTATAGAATTTGATAGAGCAATGGCAGAATTTAACAATAAAATGGTGCCTTGGACAAATCTGGAACTTCTTCAAACTGTTTGCATTCACCAAGCTCAATTTCCTGTAAATAGTCAAGTTCCTGTAAAAAATTCAAAAGGAGAGAGACATCACAACGGAAAATCCTCAAAAAAGGAAGAAAAAAAATGTAAACATGTGCACATACCTATCTTTCTTTACCTGGATCCCCTGCCAAAGTTGTTTAAGTTTGCTGTGTGGCATTGGAATCTCAACAAGAAACTTAGCAAAGAAAGGTGATGGAGACTGAAAAGGGTATCCAATCCACTCAATGTACCTCAGTTGATCAGAAAATGGCTCAAGAGTAGCAGGAAGGTCGAGGATCTTCTCTACATGCTTGACGTACTATCTCCAAAGCCGTTTGTTGCAGCAAGTCATGCATTTGTATTGTTTTGCTTTGTCAAAGCTTTGTCTTTAAGATCTTTTATTCTACTAGTTGCCGCAAAACCACAGGCATCTAATATCCTTATGACATGATCTTCCATTTTTCCTTTTAAAAAAAAAATACAATGTCTAGAAATATATTCTTTTGTGGATCATCTAATCCAGTGCAGCTCTCTTTGAACACGTTGTGAATTTTGTCATTTGGATACTTGTTGAGTTTCTTTAAAATACATTCCCAAAAACTCAGGGTTCCTTCGTATGAAGATATGAAGCCAAAGCTTTAAGCGCTAATGGAATGCCACCAGCGCATTTAACTGCATTGTTTGAGAGACTCTGGAAACGTTCTGGGGGATGCTCATTCTTGAAGGCTTTAAAAATTCTGGATTTTTCCATTTCTTGACCTTGTATCTACGTTCAACTTTTCCATCAAGCAATTTCCTATTTCTTGTTGTTATGATGAGCCTGCTATAGCGATATTGGTCACCAAACTCTGAACATAAAGACTCCAAGGAGTCTAAACTATCCATACCATCAAGAACAATCAAAACCTTCACCAACAAACGAGAGAAGAGCAAGTATTAATGTTAAACGTTCACCAACAAGCGGATTTCTGAAGTTAAATTGGGTGTCCTCTACTCTGAAGCTTAGAAATACATCGTACTTTTCCCCGAAGGAAGACTGCATATCCAAATTGCCAATGCCAAATCAGCTAGTTACGCTAATTAGTTAGA

Coding sequences of Glyma08g20341

Limit To All Plant Sequences

>Glyma08g20341.1   sequence type=CDS   gene model=Glyma08g20341   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAACTAGAATATGAGAGAGAGGAAGAAGAAGATAACAAAAGGGAAAATCAGCTTCTTGACTGGACTACTATGAAGATTGGCAATGCATTTGGAAAGAAGTGGATATCAATGACTAACGAGGAGAAGGTTAAATACTATGATATAGCATCAGAAAAGCGTATAGAATTTGATAGAGCAATGGCAGAATTTAACAATAAAATGGTGCCTTGGACAAATCTGGAACTTCTTCAAACTGTTTGCATTCACCAAGCTCAATTTCCTGTAAATAGTCAAGTTCCTGTAAAAAATTCAAAAGGAGAGAGACATCACAACGGAAAATCCTCAAAAAAGGAAGAAAAAAAATGTAAACATGTGCACATACCTATCTTTCTTTACCTGGATCCCCTGCCAAAGTTGTTTAAGTTTGCTGTGTGGCATTGGAATCTCAACAAGAAACTTAGCAAAGAAAGGTGA

>Glyma08g20341.2   sequence type=CDS   gene model=Glyma08g20341   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAACTAGAATATGAGAGAGAGGAAGAAGAAGATAACAAAAGGGAAAATCAGCTTCTTGACTGGACTACTATGAAGGAGAAGGTTAAATACTATGATATAGCATCAGAAAAGCGTATAGAATTTGATAGAGCAATGGCAGAATTTAACAATAAAATGGTGCCTTGGACAAATCTGGAACTTCTTCAAACTGTTTGCATTCACCAAGCTCAATTTCCTGTAAATAGTCAAGTTCCTGTAAAAAATTCAAAAGGAGAGAGACATCACAACGGAAAATCCTCAAAAAAGGAAGAAAAAAAATGTAAACATGTGCACATACCTATCTTTCTTTACCTGGATCCCCTGCCAAAGTTGTTTAAGTTTGCTGTGTGGCATTGGAATCTCAACAAGAAACTTAGCAAAGAAAGGTGA

Predicted protein sequences of Glyma08g20341

Limit To All Plant Sequences

>Glyma08g20341.1   sequence type=predicted peptide   gene model=Glyma08g20341   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLEYEREEEEDNKRENQLLDWTTMKIGNAFGKKWISMTNEEKVKYYDIASEKRIEFDRAMAEFNNKMVPWTNLELLQTVCIHQAQFPVNSQVPVKNSKGERHHNGKSSKKEEKKCKHVHIPIFLYLDPLPKLFKFAVWHWNLNKKLSKER*

>Glyma08g20341.2   sequence type=predicted peptide   gene model=Glyma08g20341   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLEYEREEEEDNKRENQLLDWTTMKEKVKYYDIASEKRIEFDRAMAEFNNKMVPWTNLELLQTVCIHQAQFPVNSQVPVKNSKGERHHNGKSSKKEEKKCKHVHIPIFLYLDPLPKLFKFAVWHWNLNKKLSKER*

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