Report for Sequence Feature Glyma08g20310
Feature Type: gene_model
Chromosome: Gm08
Start: 15345972
stop: 15351499
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g20310
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G11970 AT
Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF3511) | chr5:3863289-3863606 REVERSE LENGTH=105
SoyBase E_val: 2.00E-21 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF12023 PFAM
Domain of unknown function (DUF3511)
JGI ISS
UniRef100_C6T7R4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T7R4_SOYBN
SoyBase E_val: 5.00E-83 ISS
UniRef100_Q9LVK8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Gb|AAD10145.1 n=1 Tax=Arabidopsis thaliana RepID=Q9LVK8_ARATH
SoyBase E_val: 7.00E-14 ISS
Expression Patterns of Glyma08g20310
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g20310
Paralog Evidence Comments
Glyma07g00960 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g20310 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g190200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g20310
Transcripts of Glyma08g20310
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g20310.2 sequence type=transcript gene model=Glyma08g20310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TAGATATGGAGAGACGCAAAGGGGAAAGGAGTTAAGGTTTTCCGTCTAGATTGCTGATTCCAAAGACACAAACATGTGTGAGCTGATCCATAAGAGATTAGGGTACTATTTAAGATGTGAGTGTGGACCCAATTAACTAAAAAATCAGAGTGTTTTGATTTTTTATGAACGGAGATTGGTCTTAGAATTTTAGTAAAAAAAAAAAATACAACCGAAATGGAGGGATGCTCCTCTGTCACACCTCCACTTTATTATATATGAACTTGAATGTCCTATCTCCTCATTGCCCATGTTTTTTTATCCCCTTACATGCATAACATCAAATTCAAATGCTATCAATTTCTCTGTGAAAATTTGATCTAAATTCCCAAATTGCTCAATCAGTGAAAGATACATTAGTCAAAATTATTTGGAGAAAATAGGACCCATATTCATTTAAGAGCACCGGCAATCTATTAATTGAAATAGTAAAGTTGGCTTCTTCATCTATCTTCGCAATTAATGTTTTTGTAGAAATCATTAGTAGCCCCAAAATTATAAAAACTTCCTGTGTTTTTGCAATTTTACAAGTTTAGCTAAGAGGGTGGCACATTAATTAGTATTTTGTCAAAAAAAATAAAAGAATTACTCCTTCCCTACCAGCTACTTCCATGCCATAACCAATTTGATCACTTCCATGTGTAAAAGTTGGTCAAACCCAAATACTTCATACAGTTATGCCATGTTGAATGAATCCTTCTCTGTTCCACTGACTCCATTAATGAAAACGAGAAAACAAACTAACATTATTGCATTATCATCTCCAACTGTCTCCTATTCAAAGATTTTATTACATGAAGTGTTTTTTTATTCATAATATTGGTGTGAAATATATATCCATTTTTTTATGATTAATCTCTGCCGTGCAATCTGGTTGATCATCTTTAGTGAGATATTACTTCTTAATTATGTTTTTTTCTATTTATAAGACTCAAATTCAAGATCTTGTATAAAGAGATCATATATAGTATCACTCGGACCAATGTCTTGTTGGTTGATTATATGAAGTGTGGAAAGAGTAATAAACAACACCAATAAAATACAACTACAAAAAAGCAAAACCAACCGACCAACAACCTACCATCTCTTCTAGCTTCATTCTTTTCTTTCTCGCCTTAAAACTACAACCTTAGTTCTTCATTATTGTGATTGTTTCCATAATGGAGTTCAGATCAAAATCATGCAGGAATGAGAGTCTGCAGATTGAAAACTACTGTGGAGGAAGAGTGGCACCAACAAGCATGCAAGATCTGAGGTCTTATAGTTACAGTGCAACCTATGCTGGTTCTGCTTATCCATACAAGATTGGTAAGGAAAAGGAAGTGAAGGTGGATAAAGGGAAAAGCACAGTTTGCAATAGCAAAGTATCAAAAAGTTGGAGCTTCAATGACCCTGAGTTGCAGAGGAAGAAGAGGGTAGCTGGCTATAAAATATATTCTGTGGAAGGGAAAATGAAAGGCTCACTCAGGAAGAGTTTGAGGTGGATCAAGAACACATACGCCCAAGCTGTTCATGGATGGTGGTGAATGGTGATTAATTGGTATGTAGTTATATACAATATAATAATATACTACTTTTTTTTACCCTTTTTTTGTTTTCTGATATGATTTACTTGTTTTGATATGGACTCTAAAGCTATTGAAATCAAGTTATACCTTCCTTAAAAATGTTGAAAATCTTCTCATGTATTGAACTACGTAACTTATTGGTATCATCCTCCCAGATCATCTAAGCTTTCAGGGAGGCATGATCTATAAATTTTAGCAAGTTGCAGCTGAATTTCCTATTAGTAATGCTATTGGTTTTGAACTAGAATCTGGTAGATAAGATTGCTCCGCAATTTTATTTTGATTGTCTTAAATAGAAAACAGAAAAAAACTAAATAGGTTTTGGGAATTGTGTGAGTGACTCTTTCTGTGGATAAATTATTAGATAAATCCGAATCATAAGTGTTTGTGATACCAGTCAATCTCGTACATGTAGTGGTGATTTTTAATTTTTTTTTTAAAATGATAAATTTCGACTATATGTAATGTAGAAATTTATAAAAATTACTACTTTTGATCTTTTATATAAGAAATAAAAAAATAACATTTTTAGAACACGATAATCTTAAATTATGTAATAATTTTTCCTTCTTAATTTCCATTAACAAAGTTCTGGTCCACTTTATCATTGCCAAATGGAAAGCAAGATGCAAATATTAATTTAAAGTTTTGAAATAAATTTGATTTGGTCCCTAGCAGCCATTATTAGAGTGGGAGTTTAAGACACCATTCCAAGCTGTTCAGTTTTCACCAGATGTCATTAATGCTTATTTCTCTAGTGTTATAGGTGCATGGAAAGCAGACTATACAATTATAACTAGGAAAGAAAGAGTATCAAAATTTTCAGAGGAAAAATACAAAGACATCAGTAAAGGCAAATTAGTTAAAGAAAGAATTGGTTGTCTTGCATTGCATGTGATACCAATATAATCTCAAGAAATGTTAGGACAAAACTAACGCATCAACATGATCTATGTAAACTAAAAT
Coding sequences of Glyma08g20310
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g20310.1 sequence type=CDS gene model=Glyma08g20310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGTTCAGATCAAAATCATGCAGGAATGAGAGTCTGCAGATTGAAAACTACTGTGGAGGAAGAGTGGCACCAACAAGCATGCAAGATCTGAGGTCTTATAGTTACAGTGCAACCTATGCTGGTTCTGCTTATCCATACAAGATTGGTAAGGAAAAGGAAGTGAAGGTGGATAAAGGGAAAAGCACAGTTTGCAATAGCAAAGTATCAAAAAGTTGGAGCTTCAATGACCCTGAGTTGCAGAGGAAGAAGAGGGTAGCTGGCTATAAAATATATTCTGTGGAAGGGAAAATGAAAGGCTCACTCAGGAAGAGTTTGAGGTGGATCAAGAACACATACGCCCAAGCTGTTCATGGATGGTGGTGA
>Glyma08g20310.2 sequence type=CDS gene model=Glyma08g20310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGTTCAGATCAAAATCATGCAGGAATGAGAGTCTGCAGATTGAAAACTACTGTGGAGGAAGAGTGGCACCAACAAGCATGCAAGATCTGAGGTCTTATAGTTACAGTGCAACCTATGCTGGTTCTGCTTATCCATACAAGATTGGTAAGGAAAAGGAAGTGAAGGTGGATAAAGGGAAAAGCACAGTTTGCAATAGCAAAGTATCAAAAAGTTGGAGCTTCAATGACCCTGAGTTGCAGAGGAAGAAGAGGGTAGCTGGCTATAAAATATATTCTGTGGAAGGGAAAATGAAAGGCTCACTCAGGAAGAGTTTGAGGTGGATCAAGAACACATACGCCCAAGCTGTTCATGGATGGTGGTGA
Predicted protein sequences of Glyma08g20310
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g20310.1 sequence type=predicted peptide gene model=Glyma08g20310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEFRSKSCRNESLQIENYCGGRVAPTSMQDLRSYSYSATYAGSAYPYKIGKEKEVKVDKGKSTVCNSKVSKSWSFNDPELQRKKRVAGYKIYSVEGKMKGSLRKSLRWIKNTYAQAVHGWW*
>Glyma08g20310.2 sequence type=predicted peptide gene model=Glyma08g20310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEFRSKSCRNESLQIENYCGGRVAPTSMQDLRSYSYSATYAGSAYPYKIGKEKEVKVDKGKSTVCNSKVSKSWSFNDPELQRKKRVAGYKIYSVEGKMKGSLRKSLRWIKNTYAQAVHGWW*