Glyma08g20300 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma08g20300): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma08g20300): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma08g20300

Feature Type:	gene_model
Chromosome:	Gm08
Start:	15340464
stop:	15344249
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g20300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G54270	AT	Annotation by Michelle Graham. TAIR10: eif4a-2 \| chr1:20260495-20262018 FORWARD LENGTH=412	SoyBase	E_val: 0	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity	SoyBase	N/A	ISS
GO:0004386	GO-mf	Annotation by Michelle Graham. GO Molecular Function: helicase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008026	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity	SoyBase	N/A	ISS
KOG0327	KOG	Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases	JGI		ISS
PTHR24031	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24031:SF2	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00270	PFAM	DEAD/DEAH box helicase	JGI		ISS
PF00271	PFAM	Helicase conserved C-terminal domain	JGI		ISS
UniRef100_G7LI94	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic initiation factor 4A n=1 Tax=Medicago truncatula RepID=G7LI94_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KUR0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KUR0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g20300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g20300 not represented in the dataset	Glyma08g20300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g20300

Paralog	Evidence	Comments
Glyma07g00950	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g20300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g190100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g20300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g20300

Limit To All Plant Sequences

>Glyma08g20300.3   sequence type=transcript   gene model=Glyma08g20300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAGCCACTGTCATTACCAACAAAAACTTCCCCAGCCTAGATAATATTGAAAGTGTTTGCACCAGGGAGAAATGAAAGAACTACCCCTACATATACCCTTATATAAGTCGTCATGCATACATATCCAACACAACCCATGCATTCCATACAATCATGTGTATCCTTATGATTATAGGATTAGATTAGATTGTATAAATATTCAAACGAACTGCAAGGAAAACTACCCTTCTTTTTGTTGCGCAAACAAATTTACTTATAATATCCTATCCTATCCTATCCTATATTTATTTCATTATCAAATCAAAATAAAAATACAAAAAAGGAATAGAAAAGGATGTTTTATATATTGATCCCATAAGACATCTGAAAGGGTAAATGTGGAAACCTCCATTAATTGTTTTTGGTCCCATTTTTTCCTGTTACCCTTTCGAATATAACACTCCCTCTTCCTCCCTATTCGCCTCCCTTTAACTCCACGGTGCAGATCCGAGGAGTTACCCTTTCTTTTCTTTTTTCTTTTTTCTCTTTCCTCATTCTACTTAAAACTCCCACCAGTGATGGCAGGTTTGGCTCCAGAGGGAACACAATTCGATGGTCGCCAATATGATGCTAAGATGAGTGAATTGCTTTCCACTGATGGGCAAGAATTCTTCACCTCTTATGATGAAGTGTATGACAGCTTTGATGCAATGGGATTGCAAGAGAATCTTCTGCGAGGCATATATGCTTATGGTTTTGAGAGGCCTTCTGCTATACAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGACTGGATGTGATTCAACAGGCTCAGTCTGGAACAGGAAAGACAGCAACATTTTGTTCTGGAATTTTGCAGCAGCTTGATTATGGATTGGTTCAGTGCCAGGCTTTGGTTTTGGCACCAACAAGGGAGCTAGCACAGCAGATCGAGAAAGTTATGCGAGCTCTTGGTGATTACTTGGGAGTTAAGGTCCATGCTTGTGTTGGTGGGACAAGTGTTCGTGAGGATCAGCGCATTCTCCAAGCTGGTGTCCATACTGTTGTTGGCACTCCTGGGCGAGTGTTTGACATGCTGCGGAGGCAGTCTCTTCGCCCAGATTGCATAAAGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAGATCTATGACATCTTCCAGCTGCTGCCATCCAAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCGCCAGAAGCCCTTGAAATTACAAGGAAGTTCATGAATAAGCCAGTGAGAATCCTGGTAAAGCGTGATGAACTGACCCTGGAGGGTATAAAGCAGTTTTATGTCAATGTTGACAAGGAAGAGTGGAAGCTGGAGACATTATGTGACCTTTATGAGACTCTGGCTATCACTCAGAGTGTCATTTTTGTGAATACCAGGCGCAAGGTGGACTGGCTCACTGACAAGATGCGAAGCAATGACCACACAGTCTCTGCCACCCATGGTGACATGGACCAAAACACACGTGATATTATCATGCGTGAATTCCGGTCCGGCTCTTCTCGAGTTCTCATTACCACGGACCTTCTGGCCCGTGGTATCGATGTGCAGCAAGTGTCTCTGGTCATAAACTATGATCTGCCAACCCAACCTGAAAACTATCTCCACCGCATAGGACGTAGTGGTCGATTTGGAAGAAAAGGAGTTGCTATAAACTTTGTCACGACAGATGATTCCAGGATGCTGTCTGATATTCAGAAGTTCTACAATGTGACTGTAGAGGAGCTGCCATCAAATGTTGCTGATTTACTCTGATGAGTTAATGTTTGTTCTCTGTTAAGTCATCAGGTTCTTATTCTATTTGGCAAGTATTATTTGTGCTCATTTTCTCTCTATATATTTTACCCATTAGAGATCAAAGACATGTGATCTGATGCTATTTGTATTGGATTCTATAAATTTTGTTTAATCAATTAATTAGCAGGTTGCTGCTCAAGCCTGCATTTACTTTCTTGTCTCCTGCATTTCTTTTGTGTAACTCTAATTATTTTCCCTTGTAATTCATAATCACGTGAACACACCC

Coding sequences of Glyma08g20300

Limit To All Plant Sequences

>Glyma08g20300.1   sequence type=CDS   gene model=Glyma08g20300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGTTTTGCTTTTTGCAGTGATGGCAGGTTTGGCTCCAGAGGGAACACAATTCGATGGTCGCCAATATGATGCTAAGATGAGTGAATTGCTTTCCACTGATGGGCAAGAATTCTTCACCTCTTATGATGAAGTGTATGACAGCTTTGATGCAATGGGATTGCAAGAGAATCTTCTGCGAGGCATATATGCTTATGGTTTTGAGAGGCCTTCTGCTATACAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGACTGGATGTGATTCAACAGGCTCAGTCTGGAACAGGAAAGACAGCAACATTTTGTTCTGGAATTTTGCAGCAGCTTGATTATGGATTGGTTCAGTGCCAGGCTTTGGTTTTGGCACCAACAAGGGAGCTAGCACAGCAGATCGAGAAAGTTATGCGAGCTCTTGGTGATTACTTGGGAGTTAAGGTCCATGCTTGTGTTGGTGGGACAAGTGTTCGTGAGGATCAGCGCATTCTCCAAGCTGGTGTCCATACTGTTGTTGGCACTCCTGGGCGAGTGTTTGACATGCTGCGGAGGCAGTCTCTTCGCCCAGATTGCATAAAGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAGATCTATGACATCTTCCAGCTGCTGCCATCCAAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCGCCAGAAGCCCTTGAAATTACAAGGAAGTTCATGAATAAGCCAGTGAGAATCCTGGTAAAGCGTGATGAACTGACCCTGGAGGGTATAAAGCAGTTTTATGTCAATGTTGACAAGGAAGAGTGGAAGCTGGAGACATTATGTGACCTTTATGAGACTCTGGCTATCACTCAGAGTGTCATTTTTGTGAATACCAGGCGCAAGGTGGACTGGCTCACTGACAAGATGCGAAGCAATGACCACACAGTCTCTGCCACCCATGGTGACATGGACCAAAACACACGTGATATTATCATGCGTGAATTCCGGTCCGGCTCTTCTCGAGTTCTCATTACCACGGACCTTCTGGCCCGTGGTATCGATGTGCAGCAAGTGTCTCTGGTCATAAACTATGATCTGCCAACCCAACCTGAAAACTATCTCCACCGCATAGGACGTAGTGGTCGATTTGGAAGAAAAGGAGTTGCTATAAACTTTGTCACGACAGATGATTCCAGGATGCTGTCTGATATTCAGAAGTTCTACAATGTGACTGTAGAGGAGCTGCCATCAAATGTTGCTGATTTACTCTGA

>Glyma08g20300.3   sequence type=CDS   gene model=Glyma08g20300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGGTTTGGCTCCAGAGGGAACACAATTCGATGGTCGCCAATATGATGCTAAGATGAGTGAATTGCTTTCCACTGATGGGCAAGAATTCTTCACCTCTTATGATGAAGTGTATGACAGCTTTGATGCAATGGGATTGCAAGAGAATCTTCTGCGAGGCATATATGCTTATGGTTTTGAGAGGCCTTCTGCTATACAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGACTGGATGTGATTCAACAGGCTCAGTCTGGAACAGGAAAGACAGCAACATTTTGTTCTGGAATTTTGCAGCAGCTTGATTATGGATTGGTTCAGTGCCAGGCTTTGGTTTTGGCACCAACAAGGGAGCTAGCACAGCAGATCGAGAAAGTTATGCGAGCTCTTGGTGATTACTTGGGAGTTAAGGTCCATGCTTGTGTTGGTGGGACAAGTGTTCGTGAGGATCAGCGCATTCTCCAAGCTGGTGTCCATACTGTTGTTGGCACTCCTGGGCGAGTGTTTGACATGCTGCGGAGGCAGTCTCTTCGCCCAGATTGCATAAAGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGATCAGATCTATGACATCTTCCAGCTGCTGCCATCCAAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCGCCAGAAGCCCTTGAAATTACAAGGAAGTTCATGAATAAGCCAGTGAGAATCCTGGTAAAGCGTGATGAACTGACCCTGGAGGGTATAAAGCAGTTTTATGTCAATGTTGACAAGGAAGAGTGGAAGCTGGAGACATTATGTGACCTTTATGAGACTCTGGCTATCACTCAGAGTGTCATTTTTGTGAATACCAGGCGCAAGGTGGACTGGCTCACTGACAAGATGCGAAGCAATGACCACACAGTCTCTGCCACCCATGGTGACATGGACCAAAACACACGTGATATTATCATGCGTGAATTCCGGTCCGGCTCTTCTCGAGTTCTCATTACCACGGACCTTCTGGCCCGTGGTATCGATGTGCAGCAAGTGTCTCTGGTCATAAACTATGATCTGCCAACCCAACCTGAAAACTATCTCCACCGCATAGGACGTAGTGGTCGATTTGGAAGAAAAGGAGTTGCTATAAACTTTGTCACGACAGATGATTCCAGGATGCTGTCTGATATTCAGAAGTTCTACAATGTGACTGTAGAGGAGCTGCCATCAAATGTTGCTGATTTACTCTGA

Predicted protein sequences of Glyma08g20300

Limit To All Plant Sequences

>Glyma08g20300.1   sequence type=predicted peptide   gene model=Glyma08g20300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVLLFAVMAGLAPEGTQFDGRQYDAKMSELLSTDGQEFFTSYDEVYDSFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHTVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDSRMLSDIQKFYNVTVEELPSNVADLL*

>Glyma08g20300.3   sequence type=predicted peptide   gene model=Glyma08g20300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGLAPEGTQFDGRQYDAKMSELLSTDGQEFFTSYDEVYDSFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHTVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDSRMLSDIQKFYNVTVEELPSNVADLL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain