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Report for Sequence Feature Glyma08g20290

Feature Type:gene_model
Chromosome:Gm08
Start:15336558
stop:15340306
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g20290
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G57020AT Annotation by Michelle Graham. TAIR10: myristoyl-CoA:protein N-myristoyltransferase | chr5:23075451-23076755 FORWARD LENGTH=434 SoyBaseE_val: 0ISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0009853GO-bp Annotation by Michelle Graham. GO Biological Process: photorespiration SoyBaseN/AISS
GO:0010064GO-bp Annotation by Michelle Graham. GO Biological Process: embryonic shoot morphogenesis SoyBaseN/AISS
GO:0019722GO-bp Annotation by Michelle Graham. GO Biological Process: calcium-mediated signaling SoyBaseN/AISS
GO:0040007GO-bp Annotation by Michelle Graham. GO Biological Process: growth SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0080129GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0004379GO-mf Annotation by Michelle Graham. GO Molecular Function: glycylpeptide N-tetradecanoyltransferase activity SoyBaseN/AISS
GO:0019107GO-mf Annotation by Michelle Graham. GO Molecular Function: myristoyltransferase activity SoyBaseN/AISS
KOG2779 KOG N-myristoyl transferase JGI ISS
PTHR11377Panther N-MYRISTOYL TRANSFERASE JGI ISS
PF01233PFAM Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain JGI ISS
PF02799PFAM Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain JGI ISS
UniRef100_I1KUQ9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glycylpeptide N-tetradecanoyltransferase n=1 Tax=Glycine max RepID=I1KUQ9_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1KUQ9UniRef Annotation by Michelle Graham. Best UniRef hit: Glycylpeptide N-tetradecanoyltransferase n=1 Tax=Glycine max RepID=I1KUQ9_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g20290
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g20290
ParalogEvidenceComments
Glyma07g00940 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g20290 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g190000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g20290
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g20290
>Glyma08g20290.1   sequence type=CDS   gene model=Glyma08g20290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGATAGCAATCCTTCCTCTGGATCACCCGAAGAAACACAAAATCCCAACCCAGATGGGAATGCACCTGTTGAAAGTGATCTTGCATTGGAGAATCTAGCCCAAAAAGTTCAAGAATCTCTCTCTCTGGAAAAAAGACATAAATTTTGGGAAACCCAACCTGTTGGGCAGTTCAAGGATGTAGGGGACTCCAGTTTGCCAGAAGGCCCGATTGAACTTCCAACCCCCTTATCTGAGGTCAAACAAGAACCATACAACCTTCCTGACCACTATGAATGGGTTACTTGTGACATAAACTCTGAGGAGACGTGTGATGAGGTATACAACCTTCTTGCTCATAATTATGTTGAGGATGATGAGAATATGTTTCGATTTAACTACTCAAAGGAATTTCTGCGCTGGGCTCTGCAACCTCCGGGTTATTTCAAGAGTTGGCATATTGGTGTCCGTGTTAAAAGTTCCAAGAAGATGGTTGCCTTTATAACAGGTATTCCTGCTAGAATCCGAGTTCGTGATGAGGTTGTTCATATGGCAGAGATCAATTTTCTGTGTGTCCATAAGAAGCTTCGAACAAAGAGGCTTGCTCCTGTCATGATCAAAGAGGTCACCAGGAGGGTGCATCTGGAAAATATGTGGCAGGCAGCCTACACTGCTGGAGTAGTTCTCCCTACACCAATAACAACTTGTCAATACTGGCACAGATCTTTGAATCCCAAGAAGCTAATTGATGTTGGTTTTTCTCGGCTTGGTGCACGAATGACAATGAGTCGAACCATCAAGCTTTACAAGCTACCAGAATCAACAATCACCCCAGGGTTTAGGAAGATGGAAATTCATGACGTTCCTGCAGTTACCAGGCTAATTAGAAATTATTTGAGTCATTTTGTTGTTGCACCTGATTTTGATGAAAACGATGTGGAGCATTGGCTTCTTCCAAGGGATGGTGTTATTGACAGTTATCTGGTTGAAAGTCCGGAAACTCACGAGGTCACGGACTTTTGTAGTTTTTACACACTTCCTTCTTCTATCCTTGGCCACCTAAATTATAAAATTTTGAAAGCAGCATATTCATTTTATAATGTTTCCACAGTAACTCCTTTGCTTCAGCTGATAAATGATGCTCTCATTGTCGCAAAACACAAGGATTATGATGTTTTCAATGCATTAGATGTCATGCAGAATGAGACCTTCTTGAGGGAACTGAAGTTTGGACCAGGTGATGGGAAACTTCATTATTATCTTTACAACTACCGAATAAGGCATGCATTGAAGCCATCAGAGCTTGGGCTTGTGCTTCTGTAG
Predicted protein sequences of Glyma08g20290
>Glyma08g20290.1   sequence type=predicted peptide   gene model=Glyma08g20290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVDSNPSSGSPEETQNPNPDGNAPVESDLALENLAQKVQESLSLEKRHKFWETQPVGQFKDVGDSSLPEGPIELPTPLSEVKQEPYNLPDHYEWVTCDINSEETCDEVYNLLAHNYVEDDENMFRFNYSKEFLRWALQPPGYFKSWHIGVRVKSSKKMVAFITGIPARIRVRDEVVHMAEINFLCVHKKLRTKRLAPVMIKEVTRRVHLENMWQAAYTAGVVLPTPITTCQYWHRSLNPKKLIDVGFSRLGARMTMSRTIKLYKLPESTITPGFRKMEIHDVPAVTRLIRNYLSHFVVAPDFDENDVEHWLLPRDGVIDSYLVESPETHEVTDFCSFYTLPSSILGHLNYKILKAAYSFYNVSTVTPLLQLINDALIVAKHKDYDVFNALDVMQNETFLRELKFGPGDGKLHYYLYNYRIRHALKPSELGLVLL*






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