Glyma08g20270 - SoyBase

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Report for Sequence Feature Glyma08g20270

Feature Type:	gene_model
Chromosome:	Gm08
Start:	15328419
stop:	15334124
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g20270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G72740	AT	Annotation by Michelle Graham. TAIR10: Homeodomain-like/winged-helix DNA-binding family protein \| chr1:27380499-27382687 REVERSE LENGTH=281	SoyBase	E_val: 3.00E-75	ISS
GO:0006334	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleosome assembly	SoyBase	N/A	ISS
GO:0000786	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleosome	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR21717	Panther	TELOMERIC REPEAT BINDING PROTEIN	JGI		ISS
PTHR21717:SF9	Panther	TELOMERIC REPEAT BINDING PROTEIN 1	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
PF00538	PFAM	linker histone H1 and H5 family	JGI		ISS
UniRef100_I1KUQ7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUQ7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q0PJJ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MYB transcription factor MYB107 n=1 Tax=Glycine max RepID=Q0PJJ3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g20270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g20270

Paralog	Evidence	Comments
Glyma07g00930	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g20270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g189900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g20270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g20270

Limit To All Plant Sequences

>Glyma08g20270.2   sequence type=transcript   gene model=Glyma08g20270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGTGTTTTTTTGGCAAAGCAACAAAAATTCAATTTAATAAAACGTATATATACAAGGGAGTGAGTATCGAGTGAGGAAGAGTATCTGAAACTGAAAGCGAAGAAGTAGAGAACAAAGAAAGAGAGAGAGAATTGAATGTGAATGGGGAATCAGAAGCAGAAGTGGACGCAGGACGAAGAAGATGCTCTCATCGCCGGCGTTGAAAAGCACGGCCCCGGAAAGTGGAAGAACATTCTCAAGGATCCCCAATTCGCCCCTTTCCTCACTTCCCGTTCCAACATCGACCTCAAGGATAAATGGCGCAATTTGAGCGTCAGCAACGGTGCTCAGGGCTCCAAAGAAAAATCTAGGGTTCCCAAGCTTAAAGCCCTCCCTGCTCCTCCTGCTCCTACCGCCACTCCTCAGAACGCCGCTCCTGCTCTGCAAAACGCAGCATCTGATGTCACTCCCCCAGATGCTTCTCAGAATGACCAAGATGCCAAAAACCCTCCAAGGTATAATGCAATGATTTTTGAAGCTCTATCAGCGCTGAAAGATAGTAATGGATCTGACATGAATGCCATCATTAAATTCATGGAGGTACAAAATGGTTACAAGGTGAAAAAGGAAGCCTCCTCGGGGACAAAATCACCTTCACCAAAACCAAAGGATGTCCGGCCACCACAACCACAACAGCAATCCCCAGCTTCTGTCTTAATGACTAATGACACAATAAAGGAAGCTGCGGATACTGCAGCCTACAGAGTTGCTGATGCTGAAAGTAAATCATATCTGGCTGCAGAAGCAGTAAAGGAGGCTGAAAAAATATCATTGCTGGTTGAACATAGTGATTCAATGTTACAGCTAGCAAAAGATATATATGAACAATGTTCCCGTGGTGAAATTATCCTCTTGGCTTAAGATGGTCTAAGTAAGGTCTATAAATAGATTCGTCCTGATGTTGGTTTCTAAATGTAAAATTTTGTTGATACAATGAAATACTATTTTAACTTTTATTTTGGTTGTATTTTATCAGATTCCCTTAAACATTTGTATTCCTTAAAATTGCATGGAAAGTCATGTTTATAGTAATATCATTGGTCCACCAAATCTGGCCAGATTTTGGATCCAAAATGTAAGCAATAGAAACTCATTTATGTTTTTTTTGGCGATGTAATACAGATCATTCATGTCTTGATTCTTGACTCTAGTCTAGAACTCGATCCTTCGTATCCAATTTTTTTAATTAAAAG

Coding sequences of Glyma08g20270

Limit To All Plant Sequences

>Glyma08g20270.1   sequence type=CDS   gene model=Glyma08g20270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAATCAGAAGCAGAAGTGGACGCAGGACGAAGAAGATGCTCTCATCGCCGGCGTTGAAAAGCACGGCCCCGGAAAGTGGAAGAACATTCTCAAGGATCCCCAATTCGCCCCTTTCCTCACTTCCCGTTCCAACATCGACCTCAAGGATAAATGGCGCAATTTGAGCGTCAGCAACGGTGCTCAGGGCTCCAAAGAAAAATCTAGGGTTCCCAAGCTTAAAGCCCTCCCTGCTCCTCCTGCTCCTACCGCCACTCCTCAGAACGCCGCTCCTGCTCTGCAAAACGCAGCATCTGATGTCACTCCCCCAGATGCTTCTCAGAATGACCAAGATGCCAAAAACCCTCCAAGGTATAATGCAATGATTTTTGAAGCTCTATCAGCGCTGAAAGATAGTAATGGATCTGACATGAATGCCATCATTAAATTCATGGAGCAAAAAAATCTTCAGGTAAACCAAAATTTTAGAAGGGCATTAAGTACAAAGTTGAGGAGGCTTGTTAGTCAAGGGAAACTTGAAAAGGTACAAAATGGTTACAAGGTGAAAAAGGAAGCCTCCTCGGGGACAAAATCACCTTCACCAAAACCAAAGGATGTCCGGCCACCACAACCACAACAGCAATCCCCAGCTTCTGTCTTAATGACTAATGACACAATAAAGGAAGCTGCGGATACTGCAGCCTACAGAGTTGCTGATGCTGAAAGTAAATCATATCTGGCTGCAGAAGCAGTAAAGGAGGCTGAAAAAATATCATTGCTGGTTGAACATAGTGATTCAATGTTACAGCTAGCAAAAGATATATATGAACAATGTTCCCGTGGTGAAATTATCCTCTTGGCTTAA

>Glyma08g20270.2   sequence type=CDS   gene model=Glyma08g20270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAATCAGAAGCAGAAGTGGACGCAGGACGAAGAAGATGCTCTCATCGCCGGCGTTGAAAAGCACGGCCCCGGAAAGTGGAAGAACATTCTCAAGGATCCCCAATTCGCCCCTTTCCTCACTTCCCGTTCCAACATCGACCTCAAGGATAAATGGCGCAATTTGAGCGTCAGCAACGGTGCTCAGGGCTCCAAAGAAAAATCTAGGGTTCCCAAGCTTAAAGCCCTCCCTGCTCCTCCTGCTCCTACCGCCACTCCTCAGAACGCCGCTCCTGCTCTGCAAAACGCAGCATCTGATGTCACTCCCCCAGATGCTTCTCAGAATGACCAAGATGCCAAAAACCCTCCAAGGTATAATGCAATGATTTTTGAAGCTCTATCAGCGCTGAAAGATAGTAATGGATCTGACATGAATGCCATCATTAAATTCATGGAGGTACAAAATGGTTACAAGGTGAAAAAGGAAGCCTCCTCGGGGACAAAATCACCTTCACCAAAACCAAAGGATGTCCGGCCACCACAACCACAACAGCAATCCCCAGCTTCTGTCTTAATGACTAATGACACAATAAAGGAAGCTGCGGATACTGCAGCCTACAGAGTTGCTGATGCTGAAAGTAAATCATATCTGGCTGCAGAAGCAGTAAAGGAGGCTGAAAAAATATCATTGCTGGTTGAACATAGTGATTCAATGTTACAGCTAGCAAAAGATATATATGAACAATGTTCCCGTGGTGAAATTATCCTCTTGGCTTAA

Predicted protein sequences of Glyma08g20270

Limit To All Plant Sequences

>Glyma08g20270.1   sequence type=predicted peptide   gene model=Glyma08g20270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGAQGSKEKSRVPKLKALPAPPAPTATPQNAAPALQNAASDVTPPDASQNDQDAKNPPRYNAMIFEALSALKDSNGSDMNAIIKFMEQKNLQVNQNFRRALSTKLRRLVSQGKLEKVQNGYKVKKEASSGTKSPSPKPKDVRPPQPQQQSPASVLMTNDTIKEAADTAAYRVADAESKSYLAAEAVKEAEKISLLVEHSDSMLQLAKDIYEQCSRGEIILLA*

>Glyma08g20270.2   sequence type=predicted peptide   gene model=Glyma08g20270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGAQGSKEKSRVPKLKALPAPPAPTATPQNAAPALQNAASDVTPPDASQNDQDAKNPPRYNAMIFEALSALKDSNGSDMNAIIKFMEVQNGYKVKKEASSGTKSPSPKPKDVRPPQPQQQSPASVLMTNDTIKEAADTAAYRVADAESKSYLAAEAVKEAEKISLLVEHSDSMLQLAKDIYEQCSRGEIILLA*

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