Glyma08g20220 - SoyBase

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Report for Sequence Feature Glyma08g20220

Feature Type:	gene_model
Chromosome:	Gm08
Start:	15274886
stop:	15280834
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g20220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G55020	AT	Annotation by Michelle Graham. TAIR10: lipoxygenase 1 \| chr1:20525798-20530143 FORWARD LENGTH=859	SoyBase	E_val: 0	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009695	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0009816	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium, incompatible interaction	SoyBase	N/A	ISS
GO:0010311	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root formation	SoyBase	N/A	ISS
GO:0030397	GO-bp	Annotation by Michelle Graham. GO Biological Process: membrane disassembly	SoyBase	N/A	ISS
GO:0034440	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid oxidation	SoyBase	N/A	ISS
GO:0040007	GO-bp	Annotation by Michelle Graham. GO Biological Process: growth	SoyBase	N/A	ISS
GO:0048364	GO-bp	Annotation by Michelle Graham. GO Biological Process: root development	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0016165	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lipoxygenase activity	SoyBase	N/A	ISS
PTHR11771	Panther	LIPOXYGENASE	JGI		ISS
PTHR11771:SF2	Panther	LIPOXYGENASE	JGI		ISS
PF00305	PFAM	Lipoxygenase	JGI		ISS
PF01477	PFAM	PLAT/LH2 domain	JGI		ISS
UniRef100_I1KUQ3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Lipoxygenase n=1 Tax=Glycine max RepID=I1KUQ3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1KUQ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lipoxygenase n=1 Tax=Glycine max RepID=I1KUQ3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g20220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g20220

Paralog	Evidence	Comments
Glyma07g00900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g20220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g189500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g20220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g20220

Limit To All Plant Sequences

>Glyma08g20220.2   sequence type=transcript   gene model=Glyma08g20220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTCCATATGTTTTTAGCAGCCATATATTATAATAATCAACCTTGGCTGCAACTTGAGGTAAAAGCATGTTCAAAGTTACATCTCTTAATTTCCATCTATAAATAAACCTACTTTGCATCGTTACAACTCACAAATCACAATACAAAGCGTCTCTTACGTACTTGCCAAAGAGGAACAAAAGTGTTTGAGTGTTGATAGCATCATCAAGAAGAAGTTGTAAAGATGTTAGGGCTATTTGACAAGAGCCACAAGATCAAGGGCACTGTGGTGTTGATGCCCAAAAGTGTCTTGGACATTAACGACTTGAATTCAGTCAAAAATGGCGGAGTTGGTGGCGTTGTCTCTGGTATCTTTGGCGCCGTCGCCGACGTAACCGGCCAAATAGTTGATACTGCAACTGCCATCTTTTCCCGGAACGTCTCCTTCAAGTTGATCAGTGCTACCTCCACTGATGCAAAGGGAAATGGGAAAGTTGGAAACGAAACCTTTTTGGAGAAGCATCTTCCGACGCTACCAACCTTGGGAGATAGAAGGGATGCATACGATATTCATTTCGAATGGGATGCTAACTTTGGAATTCCAGGAGCATTTTACATCAGAAACTACACCTATGATGAGTTCTTCCTTGTCAGTGTCACTCTTGAGGACATTCCAAATCATGGAACCATTCACTTCGTCTGTAACTCATGGGTTTACAACTTTAAAGACTACGACAAAAAGGATCGTATTTTCTTTGCCAATAAGACATATCTTCCAAGTGCAACACCGGGTCCATTAGTTAAGTATAGAGAAGAAGAGTTGAAGATTTTAAGAGGAGATGGAACGGGAGAGCGCAAGGAACATGAAAGGATCTATGATTATGATGTCTACAATGATTTGGGTAATCCAGATGAAGATGTAAAGCTTGCTCGTCCAGTTCTTGGAGGCTCCAGCACCTATCCTTATCCTCGTAGGGTTAGAACTGGTAGAAAAGCCACCAAGAAAGATCCTAAAAGCGAGAGACCAGCAAGCGAGCTTTACATGCCAAGAGATGAAAAATTCGGTCACTTGAAGTCATCAGATTTCCTCACATATGGAATAAAATCATTATCTCAAAAGCTCTTACCTTCGCTCGAAAACGTTTTTGATTCAGACCTCACATGGAATGAGTTTGATAGCTTTGAAGAAGTAAGAGACCTGTATGAAGGTGGAATTAAGGTTCCAACAGGTGTTCTTAGCGACATTAGCCCCATACCAATCTTCAAGGAAATCTTTCGCACTGATGGTGAAAGTGTCCTTCAATTTCCACCACCTCATGTAGTCCAAGTTACTAAATCTGCATGGATGACCGATGACGAATTTGCAAGAGAGATGATTGCAGGTGTAAACCCAAATGTAATTCGTCTTCTTAAAGAGTTCCCCCCACAAAGCAAGCTGGATCCCTCTCTCTATGGTGATCAATCTAGTACAATAACAAAAGAACATTTGGAGATTAACATGGATGGGGTAACAGTAGAAGAGGCACTTAATGGTCAGAGATTATTCATATTAGATTATCAAGACGCATTCATGCCATATTTGACAAGGATAAACGCACTACCTTCTGCAAAGGCTTATGCCACAAGGACAATCCTGCTCTTGAAAGATGATGGGACTTTGAAGCCACTTGCTATCGAATTGAGCAAGCCACATCCAAGTGGAGATAATTTGGGTGCCGAGAGCAAAGTGGTCTTGCCTGCAGACCAAGGTGTTGAAAGCACAATTTGGCTATTGGCCAAGGCTCATGTTATTGTAAATGACTCGGGCTATCATCAACTCATGAGCCACTGGTTAAATACTCATGCAGTGACAGAGCCCTTCATCATAGCAACAAACAGGCGTCTCAGTGTGCTTCACCCCATTTATAAACTTCTTTATCCTCACTATCGTGACACCATAAATATCAATGGACTTGCTAGGAATGCCCTAATTAATGCTGGTGGCGTTATAGAGGAATCATTTTTGCCTGGACGGTATTCTATCGAGATGTCTTCAGCTGTTTACAAGAATTGGGTTTTCACTGACCAAGCATTACCGGTCGATCTCATCAAGAGGTAATCTTACTGAATATAAAATTACTATAAGAAAAAGATAAAAA

Coding sequences of Glyma08g20220

Limit To All Plant Sequences

>Glyma08g20220.1   sequence type=CDS   gene model=Glyma08g20220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAGGGCTATTTGACAAGAGCCACAAGATCAAGGGCACTGTGGTGTTGATGCCCAAAAGTGTCTTGGACATTAACGACTTGAATTCAGTCAAAAATGGCGGAGTTGGTGGCGTTGTCTCTGGTATCTTTGGCGCCGTCGCCGACGTAACCGGCCAAATAGTTGATACTGCAACTGCCATCTTTTCCCGGAACGTCTCCTTCAAGTTGATCAGTGCTACCTCCACTGATGCAAAGGGAAATGGGAAAGTTGGAAACGAAACCTTTTTGGAGAAGCATCTTCCGACGCTACCAACCTTGGGAGATAGAAGGGATGCATACGATATTCATTTCGAATGGGATGCTAACTTTGGAATTCCAGGAGCATTTTACATCAGAAACTACACCTATGATGAGTTCTTCCTTGTCAGTGTCACTCTTGAGGACATTCCAAATCATGGAACCATTCACTTCGTCTGTAACTCATGGGTTTACAACTTTAAAGACTACGACAAAAAGGATCGTATTTTCTTTGCCAATAAGACATATCTTCCAAGTGCAACACCGGGTCCATTAGTTAAGTATAGAGAAGAAGAGTTGAAGATTTTAAGAGGAGATGGAACGGGAGAGCGCAAGGAACATGAAAGGATCTATGATTATGATGTCTACAATGATTTGGGTAATCCAGATGAAGATGTAAAGCTTGCTCGTCCAGTTCTTGGAGGCTCCAGCACCTATCCTTATCCTCGTAGGGTTAGAACTGGTAGAAAAGCCACCAAGAAAGATCCTAAAAGCGAGAGACCAGCAAGCGAGCTTTACATGCCAAGAGATGAAAAATTCGGTCACTTGAAGTCATCAGATTTCCTCACATATGGAATAAAATCATTATCTCAAAAGCTCTTACCTTCGCTCGAAAACGTTTTTGATTCAGACCTCACATGGAATGAGTTTGATAGCTTTGAAGAAGTAAGAGACCTGTATGAAGGTGGAATTAAGGTTCCAACAGGTGTTCTTAGCGACATTAGCCCCATACCAATCTTCAAGGAAATCTTTCGCACTGATGGTGAAAGTGTCCTTCAATTTCCACCACCTCATGTAGTCCAAGTTACTAAATCTGCATGGATGACCGATGACGAATTTGCAAGAGAGATGATTGCAGGTGTAAACCCAAATGTAATTCGTCTTCTTAAAGAGTTCCCCCCACAAAGCAAGCTGGATCCCTCTCTCTATGGTGATCAATCTAGTACAATAACAAAAGAACATTTGGAGATTAACATGGATGGGGTAACAGTAGAAGAGGCACTTAATGGTCAGAGATTATTCATATTAGATTATCAAGACGCATTCATGCCATATTTGACAAGGATAAACGCACTACCTTCTGCAAAGGCTTATGCCACAAGGACAATCCTGCTCTTGAAAGATGATGGGACTTTGAAGCCACTTGCTATCGAATTGAGCAAGCCACATCCAAGTGGAGATAATTTGGGTGCCGAGAGCAAAGTGGTCTTGCCTGCAGACCAAGGTGTTGAAAGCACAATTTGGCTATTGGCCAAGGCTCATGTTATTGTAAATGACTCGGGCTATCATCAACTCATGAGCCACTGGTTAAATACTCATGCAGTGACAGAGCCCTTCATCATAGCAACAAACAGGCGTCTCAGTGTGCTTCACCCCATTTATAAACTTCTTTATCCTCACTATCGTGACACCATAAATATCAATGGACTTGCTAGGAATGCCCTAATTAATGCTGGTGGCGTTATAGAGGAATCATTTTTGCCTGGACGGTATTCTATCGAGATGTCTTCAGCTGTTTACAAGAATTGGGTTTTCACTGACCAAGCATTACCGGTCGATCTCATCAAGAGAGGAATGGCAGTTGAGGATCCATCCTCTCCCCATGGCCTTCGTCTTGCGGTAGAGGACTACCCATATGCTGTTGATGGACTAGAAATATGGGATGCTATTAAGTCATGGGTCCAAGAGTATGTTTCCTTGTATTACCCAACAGATTTGGCAATTCAACAAGATACTGAACTCCAAGCATGGTGGAAGGAAGTTGTTGAGAAGGGTCATGGTGACTTAAAAGACAAGCCTTGGTGGCCTAAAATGCAGACTCGTCAAGAGCTTATTCAATCATGTTCTACTATCATATGGATTGCTTCAGCTCTCCATGCAGCTGTTAATTTTGGACAATACCCTTATGGTGGTTTTATCCTAAACCGTCCAACTCTTAGCAGAAGATGGATTCCAGAACCAGGAACCAAAGAATATGATGAGATGGTGGAGAGTCCCCAAACGGCTTATTTGAGAACCATTACACCGAAGCGCCAAACCATTATTGATCTTACGGTGATAGAGATATTGTCAAGGCATGCTTCTGATGAGATCTACCTTGGGGAGAGAGACAATCCTAATTGGACATCTGATTCAAAGGCATTAGAAGCATTCAAAAAGTTTGGAAGCAAGCTGGCAGAAATTGAGGGAAAAATCACAGCGAGAAACAAGGATTCAAATAAGAAAAATCGCTATGGACCAGTTCAGCTGCCATACACATTGCTCCTTCCTACAAGTGAGGAAGGGTTGACTTTCAGAGGAATTCCCAACAGTATCTCTATCTAA

>Glyma08g20220.2   sequence type=CDS   gene model=Glyma08g20220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAGGGCTATTTGACAAGAGCCACAAGATCAAGGGCACTGTGGTGTTGATGCCCAAAAGTGTCTTGGACATTAACGACTTGAATTCAGTCAAAAATGGCGGAGTTGGTGGCGTTGTCTCTGGTATCTTTGGCGCCGTCGCCGACGTAACCGGCCAAATAGTTGATACTGCAACTGCCATCTTTTCCCGGAACGTCTCCTTCAAGTTGATCAGTGCTACCTCCACTGATGCAAAGGGAAATGGGAAAGTTGGAAACGAAACCTTTTTGGAGAAGCATCTTCCGACGCTACCAACCTTGGGAGATAGAAGGGATGCATACGATATTCATTTCGAATGGGATGCTAACTTTGGAATTCCAGGAGCATTTTACATCAGAAACTACACCTATGATGAGTTCTTCCTTGTCAGTGTCACTCTTGAGGACATTCCAAATCATGGAACCATTCACTTCGTCTGTAACTCATGGGTTTACAACTTTAAAGACTACGACAAAAAGGATCGTATTTTCTTTGCCAATAAGACATATCTTCCAAGTGCAACACCGGGTCCATTAGTTAAGTATAGAGAAGAAGAGTTGAAGATTTTAAGAGGAGATGGAACGGGAGAGCGCAAGGAACATGAAAGGATCTATGATTATGATGTCTACAATGATTTGGGTAATCCAGATGAAGATGTAAAGCTTGCTCGTCCAGTTCTTGGAGGCTCCAGCACCTATCCTTATCCTCGTAGGGTTAGAACTGGTAGAAAAGCCACCAAGAAAGATCCTAAAAGCGAGAGACCAGCAAGCGAGCTTTACATGCCAAGAGATGAAAAATTCGGTCACTTGAAGTCATCAGATTTCCTCACATATGGAATAAAATCATTATCTCAAAAGCTCTTACCTTCGCTCGAAAACGTTTTTGATTCAGACCTCACATGGAATGAGTTTGATAGCTTTGAAGAAGTAAGAGACCTGTATGAAGGTGGAATTAAGGTTCCAACAGGTGTTCTTAGCGACATTAGCCCCATACCAATCTTCAAGGAAATCTTTCGCACTGATGGTGAAAGTGTCCTTCAATTTCCACCACCTCATGTAGTCCAAGTTACTAAATCTGCATGGATGACCGATGACGAATTTGCAAGAGAGATGATTGCAGGTGTAAACCCAAATGTAATTCGTCTTCTTAAAGAGTTCCCCCCACAAAGCAAGCTGGATCCCTCTCTCTATGGTGATCAATCTAGTACAATAACAAAAGAACATTTGGAGATTAACATGGATGGGGTAACAGTAGAAGAGGCACTTAATGGTCAGAGATTATTCATATTAGATTATCAAGACGCATTCATGCCATATTTGACAAGGATAAACGCACTACCTTCTGCAAAGGCTTATGCCACAAGGACAATCCTGCTCTTGAAAGATGATGGGACTTTGAAGCCACTTGCTATCGAATTGAGCAAGCCACATCCAAGTGGAGATAATTTGGGTGCCGAGAGCAAAGTGGTCTTGCCTGCAGACCAAGGTGTTGAAAGCACAATTTGGCTATTGGCCAAGGCTCATGTTATTGTAAATGACTCGGGCTATCATCAACTCATGAGCCACTGGTTAAATACTCATGCAGTGACAGAGCCCTTCATCATAGCAACAAACAGGCGTCTCAGTGTGCTTCACCCCATTTATAAACTTCTTTATCCTCACTATCGTGACACCATAAATATCAATGGACTTGCTAGGAATGCCCTAATTAATGCTGGTGGCGTTATAGAGGAATCATTTTTGCCTGGACGGTATTCTATCGAGATGTCTTCAGCTGTTTACAAGAATTGGGTTTTCACTGACCAAGCATTACCGGTCGATCTCATCAAGAGGTAA

Predicted protein sequences of Glyma08g20220

Limit To All Plant Sequences

>Glyma08g20220.1   sequence type=predicted peptide   gene model=Glyma08g20220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGLFDKSHKIKGTVVLMPKSVLDINDLNSVKNGGVGGVVSGIFGAVADVTGQIVDTATAIFSRNVSFKLISATSTDAKGNGKVGNETFLEKHLPTLPTLGDRRDAYDIHFEWDANFGIPGAFYIRNYTYDEFFLVSVTLEDIPNHGTIHFVCNSWVYNFKDYDKKDRIFFANKTYLPSATPGPLVKYREEELKILRGDGTGERKEHERIYDYDVYNDLGNPDEDVKLARPVLGGSSTYPYPRRVRTGRKATKKDPKSERPASELYMPRDEKFGHLKSSDFLTYGIKSLSQKLLPSLENVFDSDLTWNEFDSFEEVRDLYEGGIKVPTGVLSDISPIPIFKEIFRTDGESVLQFPPPHVVQVTKSAWMTDDEFAREMIAGVNPNVIRLLKEFPPQSKLDPSLYGDQSSTITKEHLEINMDGVTVEEALNGQRLFILDYQDAFMPYLTRINALPSAKAYATRTILLLKDDGTLKPLAIELSKPHPSGDNLGAESKVVLPADQGVESTIWLLAKAHVIVNDSGYHQLMSHWLNTHAVTEPFIIATNRRLSVLHPIYKLLYPHYRDTININGLARNALINAGGVIEESFLPGRYSIEMSSAVYKNWVFTDQALPVDLIKRGMAVEDPSSPHGLRLAVEDYPYAVDGLEIWDAIKSWVQEYVSLYYPTDLAIQQDTELQAWWKEVVEKGHGDLKDKPWWPKMQTRQELIQSCSTIIWIASALHAAVNFGQYPYGGFILNRPTLSRRWIPEPGTKEYDEMVESPQTAYLRTITPKRQTIIDLTVIEILSRHASDEIYLGERDNPNWTSDSKALEAFKKFGSKLAEIEGKITARNKDSNKKNRYGPVQLPYTLLLPTSEEGLTFRGIPNSISI*

>Glyma08g20220.2   sequence type=predicted peptide   gene model=Glyma08g20220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGLFDKSHKIKGTVVLMPKSVLDINDLNSVKNGGVGGVVSGIFGAVADVTGQIVDTATAIFSRNVSFKLISATSTDAKGNGKVGNETFLEKHLPTLPTLGDRRDAYDIHFEWDANFGIPGAFYIRNYTYDEFFLVSVTLEDIPNHGTIHFVCNSWVYNFKDYDKKDRIFFANKTYLPSATPGPLVKYREEELKILRGDGTGERKEHERIYDYDVYNDLGNPDEDVKLARPVLGGSSTYPYPRRVRTGRKATKKDPKSERPASELYMPRDEKFGHLKSSDFLTYGIKSLSQKLLPSLENVFDSDLTWNEFDSFEEVRDLYEGGIKVPTGVLSDISPIPIFKEIFRTDGESVLQFPPPHVVQVTKSAWMTDDEFAREMIAGVNPNVIRLLKEFPPQSKLDPSLYGDQSSTITKEHLEINMDGVTVEEALNGQRLFILDYQDAFMPYLTRINALPSAKAYATRTILLLKDDGTLKPLAIELSKPHPSGDNLGAESKVVLPADQGVESTIWLLAKAHVIVNDSGYHQLMSHWLNTHAVTEPFIIATNRRLSVLHPIYKLLYPHYRDTININGLARNALINAGGVIEESFLPGRYSIEMSSAVYKNWVFTDQALPVDLIKR*

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