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Report for Sequence Feature Glyma08g20170

Feature Type:gene_model
Chromosome:Gm08
Start:15224697
stop:15225429
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g20170
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G18350AT Annotation by Michelle Graham. TAIR10: homeobox protein 24 | chr2:7971122-7971910 REVERSE LENGTH=262 SoyBaseE_val: 8.00E-23ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF04770PFAM ZF-HD protein dimerisation region JGI ISS
UniRef100_B0LK15UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger-homeodomain protein 1 (Fragment) n=1 Tax=Liriodendron tulipifera RepID=B0LK15_LIRTU SoyBaseE_val: 8.00E-26ISS
UniRef100_I1KUP9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KUP9_SOYBN SoyBaseE_val: 2.00E-84ISS

Expression Patterns of Glyma08g20170
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g20170 not represented in the dataset
Glyma08g20170 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g20170 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g189000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g20170
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g20170
>Glyma08g20170.2   sequence type=CDS   gene model=Glyma08g20170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGATATCAACCCCAACCAGCCACTACCAATGGATGAAGTGGTGACCTATAAGGAGTGTTGGCACAACCATGCTGCAGCACGTGGTCGTGTCATCTATGATGGTTGTCTTGAGTATCTTGTTGATCAGGACAATCTCATATGTGCTTGTTGTGGTTGCCACCGCAACTTTCATCGGAAGCACACCATTTTCAACGGCATACCTGAAACTCAAACACTAGATCGAGTGCAGGGGATGAGGCCTAAGAGAAAGAAGAGGACTACTTTCTCGTCAGAGCAAAGGAACAAGCTGATCTGTTTTGCTGAGAGTGTGGGGTGGAAACCTCGAAAGGATAAGAAGAACGAAATCCAAAGCTTTTGCTCCGAGATGGGAATGACCCGTAGGATGTTCCTTATTTGGCTTAGCAACAATCGTCACCGGGCAATCAAGAAAGCTTAG
Predicted protein sequences of Glyma08g20170
>Glyma08g20170.2   sequence type=predicted peptide   gene model=Glyma08g20170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDINPNQPLPMDEVVTYKECWHNHAAARGRVIYDGCLEYLVDQDNLICACCGCHRNFHRKHTIFNGIPETQTLDRVQGMRPKRKKRTTFSSEQRNKLICFAESVGWKPRKDKKNEIQSFCSEMGMTRRMFLIWLSNNRHRAIKKA*






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