Glyma08g20120 - SoyBase

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Report for Sequence Feature Glyma08g20120

Feature Type:	gene_model
Chromosome:	Gm08
Start:	15190924
stop:	15195357
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g20120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G11000	AT	Annotation by Michelle Graham. TAIR10: Seven transmembrane MLO family protein \| chr1:3671935-3675909 REVERSE LENGTH=573	SoyBase	E_val: 0	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0008219	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell death	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PF03094	PFAM	Mlo family	JGI		ISS
UniRef100_I1KUP1	UniRef	Annotation by Michelle Graham. Best UniRef hit: MLO-like protein n=1 Tax=Glycine max RepID=I1KUP1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1KUP1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MLO-like protein n=1 Tax=Glycine max RepID=I1KUP1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g20120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g20120

Paralog	Evidence	Comments
Glyma12g29080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g20120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g188600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g20120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g20120

Limit To All Plant Sequences

>Glyma08g20120.1   sequence type=CDS   gene model=Glyma08g20120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAGGTGCTGCAACGAGGTCGTTCTCTGGCTGAGACGCCAACATATTCAGTTGCCTCTGTTGTTACTCTTATGGTCTTTGTTTGCTTCTTGGTTGAGCGTTCAATCTATCGCTTTGGACAGTGGTTGAAGAACACAAGAAGGAAGGCACTTTTTGCTTCACTGGAGAAAATTAAGGAAGAACTGATGCTGCTTGGCCTTATCTCTTTGCTATTGGCACAAAGTGCAAGGTGGATCTCTGAAATTTGTGTCAATTCCTCACTTTTTAGCAGTCGCTTTTATATTTGTTCTGAGCAAGACCTCGGCATCAATGAGAATATCATGCATCAAAGCTCCTCCTCCTCCTCCTCCTCCTCCTTCCCTCAAGAAATTAATAGTGGAGCATTCAACCAATGTGGAGAGGGCCATGAACCATTTGTTTCATATGAGGGTCTTGAGCAGCTGCATCGGTTCTTATTTGTTCTTGGGATCACTCATGTTCTGTATAGTTGTCTGGCTGTTGGTTTAGCAATGAGCAAGATCTATAGTTGGCGCAGATGGGAAAATCAGGCTGCGATGGCAACCGGTGGAAACTTGCAAGGAAAGAAAATCAAGGTGATGAGGCGGCAGACAACATTTGTTTTCCATCACACTTCTCATCCATGGAGCAGGAGTCCAATCCTAAACTGGATGCTCTGTTTTGTGCGGCAATTTAGAAGCTCTATACAAAAATCAGATTACCTTGCACTCCGCTTAGGTTTCATAACTGAACACAAATTGCCGTTGTCTTATAATTTCCATCAATATATGGTTCGAAGCATGGAAGATGAATTTCATGGCATTCTAGGAATAAGCTGGCCTCTTTGGATTTATGCCATAGTCTGCATCTTCGTGAACATCCATGGTCTGAATATATACTTCTGGCTATCATTTATCCCTGCAATTCTTGTCATGTTGATAGGAACAAAACTTCAGCATGTTGTATCCACTTTAGCACTTGAAATTATGGAGCAGACAGGTCCATCTGCTCGGACACAAGTAAAGCCACGTGATGAACTTTTTTGGTTCAAAAAACCGGATATACTGTTATGGGTGATACAATTTGTCATATTTCAGAATGCCTTTGAAATGGCAACGTTTATTTGGACATTGTGGGGATTCCAAGAACGATCGTGCTTCATGAGAAACCATTACATGATCATCATTCGGTTGGCATCTGGTGCTCTTGTTCAGTTCTGGTGTAGCTATATGACAGTGCCCCTGAACGTAATAGTTTCACAGATGGGTTCTCGATGTAAGAAGGCCTTAGTAACGGAGAGTGTTAGAGAGTCCCTGCATAGTTGGTGTAAAAGAGTAAAACACAAGTCTAAGCATGATTCGTTGCATTCACACACCGCAAGATCAGTGTGTTCCCTCGAATCAACAATTGATGAGAGGGACGAAATAACAGTAGTATCCGGCACTCTAACTCGAAGCTCGTCCTTAGAGTCTTTGAATCAGATAACAGTGACTTCAGTAGACCAGCTGAACTTTGAGACTTCTTCTAATAACAACCCAGAAAAAAATTCAACCAAGGTGGCTGAGTATTTGTCGTCAGAATCTGTATATACTAATCCCCCACAACCATCCCACAACAGAGGAGAGGAAGCAAAAGCTATCACTCTTCTTGATTTGTTTCAGAAAACATGA

Predicted protein sequences of Glyma08g20120

Limit To All Plant Sequences

>Glyma08g20120.1   sequence type=predicted peptide   gene model=Glyma08g20120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEVLQRGRSLAETPTYSVASVVTLMVFVCFLVERSIYRFGQWLKNTRRKALFASLEKIKEELMLLGLISLLLAQSARWISEICVNSSLFSSRFYICSEQDLGINENIMHQSSSSSSSSSFPQEINSGAFNQCGEGHEPFVSYEGLEQLHRFLFVLGITHVLYSCLAVGLAMSKIYSWRRWENQAAMATGGNLQGKKIKVMRRQTTFVFHHTSHPWSRSPILNWMLCFVRQFRSSIQKSDYLALRLGFITEHKLPLSYNFHQYMVRSMEDEFHGILGISWPLWIYAIVCIFVNIHGLNIYFWLSFIPAILVMLIGTKLQHVVSTLALEIMEQTGPSARTQVKPRDELFWFKKPDILLWVIQFVIFQNAFEMATFIWTLWGFQERSCFMRNHYMIIIRLASGALVQFWCSYMTVPLNVIVSQMGSRCKKALVTESVRESLHSWCKRVKHKSKHDSLHSHTARSVCSLESTIDERDEITVVSGTLTRSSSLESLNQITVTSVDQLNFETSSNNNPEKNSTKVAEYLSSESVYTNPPQPSHNRGEEAKAITLLDLFQKT*

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