Report for Sequence Feature Glyma08g20030
Feature Type: gene_model
Chromosome: Gm08
Start: 15110277
stop: 15117125
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g20030
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G22200 AT
Annotation by Michelle Graham. TAIR10: potassium transport 2/3 | chr4:11746666-11750091 REVERSE LENGTH=802
SoyBase E_val: 0 ISS
GO:0006811 GO-bp
Annotation by Michelle Graham. GO Biological Process: ion transport
SoyBase N/A ISS
GO:0006813 GO-bp
Annotation by Michelle Graham. GO Biological Process: potassium ion transport
SoyBase N/A ISS
GO:0009737 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus
SoyBase N/A ISS
GO:0010264 GO-bp
Annotation by Michelle Graham. GO Biological Process: myo-inositol hexakisphosphate biosynthetic process
SoyBase N/A ISS
GO:0042391 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of membrane potential
SoyBase N/A ISS
GO:0055085 GO-bp
Annotation by Michelle Graham. GO Biological Process: transmembrane transport
SoyBase N/A ISS
GO:0009506 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0005216 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ion channel activity
SoyBase N/A ISS
GO:0005242 GO-mf
Annotation by Michelle Graham. GO Molecular Function: inward rectifier potassium channel activity
SoyBase N/A ISS
GO:0005249 GO-mf
Annotation by Michelle Graham. GO Molecular Function: voltage-gated potassium channel activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0030551 GO-mf
Annotation by Michelle Graham. GO Molecular Function: cyclic nucleotide binding
SoyBase N/A ISS
GO:0042802 GO-mf
Annotation by Michelle Graham. GO Molecular Function: identical protein binding
SoyBase N/A ISS
KOG0498
KOG
K+-channel ERG and related proteins, contain PAS/PAC sensor domain
JGI ISS
PTHR10217 Panther
VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL
JGI ISS
PTHR10217:SF6 Panther
EAG-RELATED VOLTAGE-GATED POTASSIUM CHANNEL
JGI ISS
PF00023 PFAM
Ankyrin repeat
JGI ISS
PF00027 PFAM
Cyclic nucleotide-binding domain
JGI ISS
PF00520 PFAM
Ion transport protein
JGI ISS
PF11834 PFAM
Domain of unknown function (DUF3354)
JGI ISS
UniRef100_G7IPF9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Potassium channel n=1 Tax=Medicago truncatula RepID=G7IPF9_MEDTR
SoyBase E_val: 0 ISS
UniRef100_G7IPF9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Potassium channel n=1 Tax=Medicago truncatula RepID=G7IPF9_MEDTR
SoyBase E_val: 0 ISS
Proteins Associated with Glyma08g20030
Locus Gene Symbol Protein Name
AKT2 Potassium channel AKT2 gene
Expression Patterns of Glyma08g20030
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g20030
Paralog Evidence Comments
Glyma12g29190 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g20030 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g187600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g20030
Coding sequences of Glyma08g20030
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g20030.2 sequence type=CDS gene model=Glyma08g20030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGGGGATGAACTTCAGTTCATACAATCCTCAACTAGCCTCTAGCTTGAAGAAGAGTTACAGCAAGCAAGAGCATGATCATTCAGTAGAGCGTAATCATCTCAATGAAGAAGATCATATGTCTCCCTCTTTCAATCTGCGGAATATTTCAAAGCTCATTCTCCCCCCACTTGGTGTTTCAAGCCAGAATCCAGTTAACTCAAAAGGATGGATCATATCACCAATGGATTCCAGATACAGGTGTTGGGAGAGTTTTATGGTTCTTCTGGTAGCTTATTCTGCATGGGTGTATCCCTTTGAAGTTGCTTTCATGCACAAGTCTTCCAATAAGGAAATCTATATTGTGGACACTGTTGTTGATCTTTTCTTCGGTATTGATATTGTTTTGACATTCTTCGTGGCTTACATTGATCGAACCACTCATCTACTAGTTCGAGACAAGAAGAAGATTGTAGTAAGATACCTGTCTACATGGTTCGTGATGGATTTGGCATCAACTATACCATATGAGGCAATTGGATATTTGTTCACTGGCAGACAGAAAGTGGGCCTCCCATACTTCCTCTTGGGCCTGCTCAGATTTTGGAGAATCAGACGGGTCAAGCAATACTTCACAAGGCTTGAGAAAGACATCAGGTTCAGCTATTTCTGGGTCCGATGTGCTAGGCTTCTTTCTGTAACACTTTTTTCAGTTCATTGTGCTGGGTGTCTGTATTACATGCTAGCTGATCGTTACCCCCACCAAGGAAAGACATGGATTGGAGCTGTGAATCCAAACTTCCGAGAGACAAGCCTTCGGATCAGATACATTTCAGCCATGTACTGGTCCATCACTACCATGACCACTGTAGGTTATGGTGACCTCCACGCTGTCAACACCATAGAAATGATCTTCATTATTTTCTACATGCTCTTTAACCTTGGCCTAACTGCTTACTTGATTGGTAACATGACAAATCTTGTTGTTGAAGGAACTCGCCGTACCATGGAGTTTAGAAATAGCATTGAAGCAGCATCAAATTTTGTGTGCCGAAATCGGTTGCCTCCAAGGTTAAAAGAGCAGATCTTGGCTTACATGTGCTTAAGATTTAAGGCAGAGAGCTTGAACCAGCATCAGCTTATTGAACAGCTTCCGAAGTCGATTTGCAAAAGCATCTGCCAGCATTTGTTTTTTGCAACTGTAGAGAAAGTCTATCTTTTCAAAGGCGTCTCAAAAGAAATTATTTTGTCCCTGGTTGCAAAAATGAAGGCAGAATACATACCACCCAGAGAGGATGTTATCATGCAAAATGAAGCACCAGATGATGTTTACATAATAGTCTCTGGCGAAGTGGAGATCCTCGATACTGAAACGGAGAAAGAAAGAATTTTAGGGACTCTACATACTGGGGAAATGTTTGGAGAGTTTGGTGCACTTTGTTGTAGACCTCAGAGCCTTACCTACAGAACCAAGACTCTCACACAGCTCCTGAGACTCAAGACCAATACTCTTCTAGAAGCAATGCAGATTAAAAGAGAAGATAACATACAAATACTCAAAAATTTTCTTCAGCATTTCAAGCAGGTTAAGGATCTGAGTATCAAAGATTTGATGGTGGAGAACGTAGAAGAAGAGGACCCTAACATGGCTGTGAACTTGCTAACTGTGGCAAGCACTGGCAATGCTGCTTTTCTTGAGGAGCTTCTAAGAGCAGGTTTGGATCCTGACATTGGAGACTCCAAAGGGAAAACTCCATTGCACATAGCAGCATCAAATGGGCATGAAGGGTGTGTTAAAGTCTTACTCAAGCATGCATGCAACATGCATATAAAAGACATGAATGGTAACACTGCACTATGGGATGCTATAGCATCAAAACATTACTCAATATTCCGGATCCTCTTCCAGCTTTCTGCTCTCTCTGATCCAAACATAGCAGGCGATCTCATGTGTACAGCAGCAAAAAGAAATGAACTAACAGTGATGACCGATCTTCTAAGGCAAGGACTAAACGTTGACTCCAAAGATCACCGTGATACAACTGCAATCCAAATTGCCATGGCCGAAAATCATGTTGACATGGTTCAGTTGCTTGTCATGAATGGTGCTGATGTCTCTGATGTGCATAACCATGAATTTTGTTCATCCACCTTAAATGAAATGCTGCAGAAGCGTGAAATTGGGCATCTAATTAATGTAACTGAGGTCATGCTCAGTGAAGTTGTATTAAAAGGGAGACATCAAGAGCAGGAGCACAATGGAGGAAGATCTAATAGTGGACTAAAGTTTCCAAGGGTAAGCATATATAGAGGTCACCCTGTAGTTAGAAGAGAAAAATGTTCCATGGAAGCTGGGAAGCTAATAAGGTTGCCTGATTCAATAGAGGAACTAAAAACTATTGCAGGTGAAAAATTTGGGTTTGATGCAAAAGATGCAATGGTGACAAATGAAGAAGGAGCTGAAATAGACTCCGTTGATGTGATCAGAGATAATGACAAACTTTTTTTTTGTTGGATAAGCTGA
Predicted protein sequences of Glyma08g20030
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g20030.2 sequence type=predicted peptide gene model=Glyma08g20030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEGMNFSSYNPQLASSLKKSYSKQEHDHSVERNHLNEEDHMSPSFNLRNISKLILPPLGVSSQNPVNSKGWIISPMDSRYRCWESFMVLLVAYSAWVYPFEVAFMHKSSNKEIYIVDTVVDLFFGIDIVLTFFVAYIDRTTHLLVRDKKKIVVRYLSTWFVMDLASTIPYEAIGYLFTGRQKVGLPYFLLGLLRFWRIRRVKQYFTRLEKDIRFSYFWVRCARLLSVTLFSVHCAGCLYYMLADRYPHQGKTWIGAVNPNFRETSLRIRYISAMYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVCRNRLPPRLKEQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFFATVEKVYLFKGVSKEIILSLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEILDTETEKERILGTLHTGEMFGEFGALCCRPQSLTYRTKTLTQLLRLKTNTLLEAMQIKREDNIQILKNFLQHFKQVKDLSIKDLMVENVEEEDPNMAVNLLTVASTGNAAFLEELLRAGLDPDIGDSKGKTPLHIAASNGHEGCVKVLLKHACNMHIKDMNGNTALWDAIASKHYSIFRILFQLSALSDPNIAGDLMCTAAKRNELTVMTDLLRQGLNVDSKDHRDTTAIQIAMAENHVDMVQLLVMNGADVSDVHNHEFCSSTLNEMLQKREIGHLINVTEVMLSEVVLKGRHQEQEHNGGRSNSGLKFPRVSIYRGHPVVRREKCSMEAGKLIRLPDSIEELKTIAGEKFGFDAKDAMVTNEEGAEIDSVDVIRDNDKLFFCWIS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
