Glyma08g19995 - SoyBase

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Report for Sequence Feature Glyma08g19995

Feature Type:	gene_model
Chromosome:	Gm08
Start:	15066603
stop:	15069862
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g19995

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_G7IPG2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Medicago truncatula RepID=G7IPG2_MEDTR	SoyBase	E_val: 8.00E-06	ISS

Expression Patterns of Glyma08g19995

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g19995 not represented in the dataset	Glyma08g19995 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g19995

Paralog	Evidence	Comments
Glyma15g05065	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g19995 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g187300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g19995

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g19995

Limit To All Plant Sequences

>Glyma08g19995.2   sequence type=transcript   gene model=Glyma08g19995   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAATTCTTTCATTCTCAATATCAATCTCATTTTCATATCTTTATCGGAAAAAAGGTTTGATTTTACAATCTGGTCTATTGAGTCAACAAGAGTATGGATTCTGGAAAGACTAATGAAGCACCCAATGCAAAGCTGGTTCGTGACTTTGACTTGAACATTTCATATGTGGAGGAGTTTGATGTGAATGCTGAAGACAAACTTTCATCGCCCATTCTCATGAATACTCAGCCGGCTTCTCAAAATTGCATTGAAAACATGAACATTCAGGATGAAATTGCAAATAACGGGGACACAACTATTCAAGCAAATTCTGCTGCTAAGGGAGTTACCTCTGTCTCCTTTGCACCAGGAAGAATCTCACAATACCGTCGTCGTCGCCGCCGTCGCAGTGTAGAATGTAAGCCGAGTACTGATCCAGATAGACTCTGCACAAATACTTATTGTAAAACAAGAAGAACTCCCTTGTGGCGCAAGGGACCTCTGGGACCAAAGAATTTAATTAGAATTGATCCTGCCGTCTATTTACATATCCACACCTAG

Coding sequences of Glyma08g19995

Limit To All Plant Sequences

>Glyma08g19995.1   sequence type=CDS   gene model=Glyma08g19995   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCTGGAAAGACTAATGAAGCACCCAATGCAAAGCTGGTTCGTGACTTTGACTTGAACATTTCATATGTGGAGGAGTTTGATGTGAATGCTGAAGACAAACTTTCATCGCCCATTCTCATGAATACTCAGCCGGCTTCTCAAAATTGCATTGAAAACATGAACATTCAGGATGAAATTGCAAATAACGGGGACACAACTATTCAAGCAAATTCTGCTGCTAAGGGAGTTACCTCTGTCTCCTTTGCACCAGGAAGAATCTCACAATACCGTCGTCGTCGCCGCCGTCGCAGTGTAGAATGTAAGCCGAGTACTGATCCAGATAGACTCTGCACAAATACTTATTGTAAAACAAGAAGAACTCCCTTGTGGCGCAAGGGACCTCTGGGACCAAAGAATTTAATTAGAATTGATCCTGCCGTCTATTTACATATCCACACCTAG

>Glyma08g19995.2   sequence type=CDS   gene model=Glyma08g19995   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCTGGAAAGACTAATGAAGCACCCAATGCAAAGCTGGTTCGTGACTTTGACTTGAACATTTCATATGTGGAGGAGTTTGATGTGAATGCTGAAGACAAACTTTCATCGCCCATTCTCATGAATACTCAGCCGGCTTCTCAAAATTGCATTGAAAACATGAACATTCAGGATGAAATTGCAAATAACGGGGACACAACTATTCAAGCAAATTCTGCTGCTAAGGGAGTTACCTCTGTCTCCTTTGCACCAGGAAGAATCTCACAATACCGTCGTCGTCGCCGCCGTCGCAGTGTAGAATGTAAGCCGAGTACTGATCCAGATAGACTCTGCACAAATACTTATTGTAAAACAAGAAGAACTCCCTTGTGGCGCAAGGGACCTCTGGGACCAAAGAATTTAATTAGAATTGATCCTGCCGTCTATTTACATATCCACACCTAG

Predicted protein sequences of Glyma08g19995

Limit To All Plant Sequences

>Glyma08g19995.1   sequence type=predicted peptide   gene model=Glyma08g19995   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSGKTNEAPNAKLVRDFDLNISYVEEFDVNAEDKLSSPILMNTQPASQNCIENMNIQDEIANNGDTTIQANSAAKGVTSVSFAPGRISQYRRRRRRRSVECKPSTDPDRLCTNTYCKTRRTPLWRKGPLGPKNLIRIDPAVYLHIHT*

>Glyma08g19995.2   sequence type=predicted peptide   gene model=Glyma08g19995   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSGKTNEAPNAKLVRDFDLNISYVEEFDVNAEDKLSSPILMNTQPASQNCIENMNIQDEIANNGDTTIQANSAAKGVTSVSFAPGRISQYRRRRRRRSVECKPSTDPDRLCTNTYCKTRRTPLWRKGPLGPKNLIRIDPAVYLHIHT*

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