SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G27640 | AT | Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein | chr4:13798013-13802976 REVERSE LENGTH=1048 | SoyBase | E_val: 0 | ISS |
| GO:0000059 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus, docking | SoyBase | N/A | ISS |
| GO:0006094 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gluconeogenesis | SoyBase | N/A | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0007010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0010498 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005643 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear pore | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0008565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein transporter activity | SoyBase | N/A | ISS |
| KOG2171 | KOG | Karyopherin (importin) beta 3 | JGI | ISS | |
| PTHR10527 | Panther | IMPORTIN BETA | JGI | ISS | |
| PTHR10527:SF6 | Panther | IMPORTIN BETA-1 | JGI | ISS | |
| PF02985 | PFAM | HEAT repeat | JGI | ISS | |
| PF03810 | PFAM | Importin-beta N-terminal domain | JGI | ISS | |
| UniRef100_I1KUM4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUM4_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q8W498 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Armadillo/beta-catenin-like repeat-containing protein n=2 Tax=Arabidopsis thaliana RepID=Q8W498_ARATH | SoyBase | E_val: 0 | ISS |
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Glyma08g19960 not represented in the dataset |
Glyma08g19960 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g05090 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g187000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g19960.1 sequence type=CDS gene model=Glyma08g19960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGCAGTCTCTCGAGCTGTTGCTGATTCAGTTCCTCATGCCCGACAACGACGCCCGCCGTCAAGCCGAGGACCAAATTAAGCGTCTGGCCAAGGACCCCCAGGTGGTTCCCGCCCTCGTTCAGCACATGCGCACCGCCAAAACCCCCAACGTCCGCCAGCTCGCCGCCGTCCTCCTCCGCAAGAAGATCACCGGCCACTGGGCCAAGCTCTCTCCCCAACTCAAACAACTCGTCATGCAGTCCCTCATCGAAACCATTACCATGGAGCACAGTCCCCCTGTTAGGAAAGCCAGTGCCAACGTTGTCAGTATCGTTGCCAAGTACGCCGTTCCCTCCGGCGAGTGGCCCGATTTGTTGCCCTTTCTCTTCGAACGTAGTCAGAGTGCGCAGGAAGACCATCGAGAAGTGGCATTAATTCTCTTCAGCTCTTTAACCGAAACAATTGGGAATACTTTCCGGCCGTATTTTACTCGTCTGCAAGATCTTCTGCTCAAGTGCTTGCAGGACGAGACTAGCAACCGGGTTAGAGTTGCTGCCCTCAAGGCAGTGGGATCTTTTCTGGAATTCACTCATGACGAGATTGAAGTGATTAAGTTTCGTGAGTTCATTCCAAGCATCTTGAATGTATCACGACAGTGCCTTGCCTCAGGAGAAGAAGATGTTGCCATACTTGCTTTTGAAATTTTTGATGAGCTGATAGAATCTCCTGCACCTCTTCTCGGAGATTCAGTGAAATCTATAGTGCAGTTCTCCCTTGAGGTTTGCTCAAGTCAAAATTTAGAGTCTAACACACGTCATCAGGCAATTCAAATCATTTCATGGCTGGCAAAGTACAAGTCCAGTACTTTGAAAAAGCATAAGCTGATCACACCTATTCTACAAGTTTTATGCCCTTTGCTTGCTGAATCAACTAATGAAACTGAAGATGATGATCTTGCACCGGATCGGGCTGCTGCCGAAGTTATTGATACCATGGCTTTAAACATCCCGAAGCATGTTTTCCAACCAGTTTTTGAATTTGCTTCTGTAAGCTGTCAAAATGCAAACCCGAAGTTTCGGGAAGCTTCTGTTACTGCTTTGGGTGTCATTTCAGAAGGTTGTTTGGAACTCATGAAAACTAAGCTGGAACCTGTTCTCCATATTGTCCTGGGAGCTCTAAGGGACCCAGAACAAATGGTCCGAGGGGCAGCTTCCTTTGCTTTGGGTCAATTTGCTGAGCACTTACAGCCTGAAATTGTATCCCATTATGAGAGTGTTCTTCCCTGCATTTTAAATGCTCTTGAGGATGCCTCTGATGAAGTAAAGGAGAAGTCATATTATGCGTTGGCTGCTTTTTGCGAGAACATGGGTGAAGACATCCTTCCTTTCTTAGATCCTTTGATGAAAAGACTGTTGACAGCTCTCCAAAATAGTTCCCGAGTTTTGCAGGAAACATGCATGTCTGCCATTGGTTCTATAGCTTCTGCTGCAGAGCAAGCATTCATTCCTTATGCCGAAAGGGTTTTAGAGTTGATGAAAATTTTCATGGTGTTAACTAATGACGAGGATCTTCGTTCCCGTGCAAGAGCAACTGAACTAGTTGGAATTGTTGCAATGTCTGTAGGGAGAGTGAGAATGGAACCAATATTACCTCCTTACATAGAAGCTGCAATTTCTGGATTTGGGCTGGAGTTTAGTGAGCTTCGGGAGTACACCCATGGATTCTTCAGCAATGTTGCTGAGATTTTGGATGACAGTTTTGCACATTATCTTCCTCATGTTGTGCCTCTTGCATTTTCTTCCTGCAATCTTGATGATGGCTCTGCGGTTGACATTGATGAGTGTGACGATGAAATCACTAATGGATTTGGAGGAGTTTCATCAGATGATGAAGCTCACGATGAACCAAGAGTTCGAAATATAAGTATTAGAACTGGTGTGTTGGATGAAAAGGCAGCTGCAACCCAGGCCCTTGGCCTGTTTGCACAGCACACAAAGACTTCTTATGCACCCTACTTGGAGGAGACACTAAGAATCTTGGTTAAACACTCCAGTTATTTCCATGAAGACGTTAGACTTCAGGCTATCATTTCTTTAAAACATATTTTAACTGCGGCCCATGGAATCTTCCAAAGTCAAAATGAAGGGGCTGCTAAAGCAAAAGAACTTCTTGATACTGTGATGAATATTTACATCAAGACTATGGTTGAAGATGATGACAAGGAAGTGGTTGCTCAAGCATGCACTAGTGTGGCTGACATCATTAGAGATTTTGGTTATGCAACTCTTGAGCCGTACTTGTCCCAGCTTGTTGATGCAACTTCATTGTTGCTTCAGGAGAAATCTTCTTGTCAGCAGATAGAGTCAGACAGTGAAATTGATGATGTTGATAGTGCACACGATGAAGTGCTTATGGATGCAGTTTCAGATCTTCTCCCTGCATTTGCAAAGTCCATTGGTGCTCAATTTGCTCCCATTTTTGCACAGCTATTTGAACCTCTAATGAAATTTGCAAAATCTTCTCGTCCTCCTCAAGATAGGACTATGGTAGTTGCCTGCCTTGCTGAAGTTGCTCAGAACATGGGTTTTCCTATTGCAAGCTATGTTGATAGGGTGATGCCCTTGGTACTTAAAGAACTAGCATCATCCGAGGCAACTAATAGAAGGAATGCTGCATTTTGTGTTGGAGAATTGTGCAAAAATGGTCATGAACCAGCTTTGAAATACTATGACAATATTTTACGTGGACTTTATCCCTTGTTTGGTGAGTCTGAGCCTGATGATGCAGTGAGAGATAATGCTGCTGGTGCCGTGGCAAGGATGATCATGGTACACCCTGAATCTATCCCATTAAATCAGGTTCTTCCTGTTTTCTTGCGAGTTCTTCCATTAAAAGAAGACCGCGAGGAGTCTATGGCTGTCTATAGCTGTGTCTCCACTCTTGTATTCTCATCCAATCCCCAGATCCTGTCCCTAGTCCCTGAATTAGTTAATCTTTTTGCTCTAGTGGTGGTATCACCTGTGGAGACGCCTGAAGTTAAAGCTGTAGTAGGCAGAGCTTTTTCTCATCTAATTTCATTATATGGGCAACAAATTCAACCTCTTCTGAGCAATCTCCCACCTGCACATGCAAATGCATTATCTGCATTTGCTCAACGGAGTTGA
>Glyma08g19960.1 sequence type=predicted peptide gene model=Glyma08g19960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHMRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVMQSLIETITMEHSPPVRKASANVVSIVAKYAVPSGEWPDLLPFLFERSQSAQEDHREVALILFSSLTETIGNTFRPYFTRLQDLLLKCLQDETSNRVRVAALKAVGSFLEFTHDEIEVIKFREFIPSILNVSRQCLASGEEDVAILAFEIFDELIESPAPLLGDSVKSIVQFSLEVCSSQNLESNTRHQAIQIISWLAKYKSSTLKKHKLITPILQVLCPLLAESTNETEDDDLAPDRAAAEVIDTMALNIPKHVFQPVFEFASVSCQNANPKFREASVTALGVISEGCLELMKTKLEPVLHIVLGALRDPEQMVRGAASFALGQFAEHLQPEIVSHYESVLPCILNALEDASDEVKEKSYYALAAFCENMGEDILPFLDPLMKRLLTALQNSSRVLQETCMSAIGSIASAAEQAFIPYAERVLELMKIFMVLTNDEDLRSRARATELVGIVAMSVGRVRMEPILPPYIEAAISGFGLEFSELREYTHGFFSNVAEILDDSFAHYLPHVVPLAFSSCNLDDGSAVDIDECDDEITNGFGGVSSDDEAHDEPRVRNISIRTGVLDEKAAATQALGLFAQHTKTSYAPYLEETLRILVKHSSYFHEDVRLQAIISLKHILTAAHGIFQSQNEGAAKAKELLDTVMNIYIKTMVEDDDKEVVAQACTSVADIIRDFGYATLEPYLSQLVDATSLLLQEKSSCQQIESDSEIDDVDSAHDEVLMDAVSDLLPAFAKSIGAQFAPIFAQLFEPLMKFAKSSRPPQDRTMVVACLAEVAQNMGFPIASYVDRVMPLVLKELASSEATNRRNAAFCVGELCKNGHEPALKYYDNILRGLYPLFGESEPDDAVRDNAAGAVARMIMVHPESIPLNQVLPVFLRVLPLKEDREESMAVYSCVSTLVFSSNPQILSLVPELVNLFALVVVSPVETPEVKAVVGRAFSHLISLYGQQIQPLLSNLPPAHANALSAFAQRS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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