SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G01610 | AT | Annotation by Michelle Graham. TAIR10: cell division cycle 48C | chr3:231787-235057 FORWARD LENGTH=820 | SoyBase | E_val: 0 | ISS |
| GO:0000085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0000398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0016571 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone methylation | SoyBase | N/A | ISS |
| GO:0016579 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein deubiquitination | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0030422 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of siRNA involved in RNA interference | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0043687 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-translational protein modification | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| KOG0733 | KOG | Nuclear AAA ATPase (VCP subfamily) | JGI | ISS | |
| PTHR23077 | Panther | AAA-FAMILY ATPASE | JGI | ISS | |
| PTHR23077:SF16 | Panther | NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE (NUCLEAR VCP-LIKE PROTEIN) | JGI | ISS | |
| PF00004 | PFAM | ATPase family associated with various cellular activities (AAA) | JGI | ISS | |
| UniRef100_G7IPH1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cell division control protein-like protein n=1 Tax=Medicago truncatula RepID=G7IPH1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KUM2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUM2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g19920 not represented in the dataset |
Glyma08g19920 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g05110 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g186800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g19920.1 sequence type=CDS gene model=Glyma08g19920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAAGAAGAAACGGTGGTAGGTCCCTTCAAGAAACCCTCCGTCGCCGACTTGAGTCATGCAAATCCAAATACTCCACCGCCGAAGAATTCGCCAACCATCTCCGTTCAACTTATCCCGATTACCACCGAACCAAGCACCAAACCCTAATTCGATTTGTTCAGGAAGCTCTTCATTCCACCGCCAAGCTTAATCACACTCCCACACCCAAGCACTGCGACGGCGACGACGATGACGACGAAGAAGGAGAGGCTCAAAGCGCGTCTCGAAAGCGGCGGAAGAAAATCGATGGGAGTGAAGAGAGATTGCAGAGGATGGAAGCGTTACACGTCCGAAGCAAGGTGCAGAGATCTTCCTCATCGTCCTCTGCTTCGGAGAGCGACGATGAAGATGAAGAAGAAACCGTGTCGACTTCGGAGGACGCAATTTACGGGGAGAAGGTGGAGCCTGAGTTTGATTTGATGAAGACAATGCTGCGAAAGTCGTATACGCCGAAGAAGGTTGCCGCGGAGGAAAAAAACGTTGAATTGGAGGTGGGGAATAGCAGTAAGGACACTCTTGTGAACGAGGAAAGGAAGGAAGTGAAGGGCTCAAGTTCGGGTTCGGTTTCGAACAGGAAGGACGGACCGAGGTTTAAGGATTTGGGTGGGATGAAGGAGGTTTTGGAGGAACTGAAGATGGAAGTGATCGTGCCTTTGTTCCACCCCCAATTGCCAAGACAGTTGGGAGTGAGACCAATGGCTGGCATTTTGTTGCATGGACCACCTGGCTGTGGGAAGACTAAACTTGCTCATGCCATAGCTCATGAGACTGGTCTTCCTTTCTATCAGATTTCAGCTACTGAGGTGGTTTCTGGAGTTTCAGGTGCATCTGAAGAAAATATTAGAGAGCTTTTTGCTAAAGCGTACAGGTCTGCGCCTGCTATTGTCTTTATTGACGAGATTGATGCAATTGCATCTAAAAGAGAGAATTTGCAGCGTGAGATGGAGAAACGTATTGTGACGCAATTAATGACTTGCATGGATCAATCAAATAGGCTTCTTCAACCAGCGGATGATGTGGAGAGTTCTGGTGATGATCATCATCCTGGCTATGTTCTTGTAATTGGAGCTACTAATAGGCCTGATGCTGTTGACCCTGCCCTAAGAAGGCCCGGCCGGTTTGATCGTGAGATTATCATTGGCAATCCCGATGAATCTGCCAGGGAGGAGATCCTTTCTGTGCTCACTTGCGATCTTAGACTTGAGGGTTTATTTGATCTACGGAAAATAGCCAGGGCTACATCAGGATTCGTTGGTGCTGATTTGGCGGCTCTGGTTGACAAGGCTGGTAATCTTGCTATGAAGAGAATAATTGATGAAAGGAAACGTGAATTATCTCAAGATCTCACGAGTGAGCATGCTGAAGACTGGTGGAGGGAACCTTGGTCGGTTGAAGAAATAAACAAGCTTGCCATCAAAATGTCCGATTTCGAGGAAGCAGCTAATAAGGTGCAACCTTCATTAAGAAGAGAAGGGTTCTCTTCCATTCCTAATGTAAAATGGGACGACGTTGGAGGGCTTGATCTTTTAAGAAAGGAGTTTGAACGTTACATTGTAAGACGTATAAAATATCCTGAAGATTATGAGGAGCTTGGGGTGGATCTCGAGACGGGATTTTTGCTTTATGGACCTCCTGGGTGTGGTAAAACACTGATTGCCAAAGCTGTTGCCAATGAGGCAGGGGCTACTTTTATTCATATTAAGGGACCTGAACTTTTAAATAAATATGTTGGAGAAAGTGAGCTTGCAGTTCGTACAATGTTTAGCCGTGCAAGGACATGTGCGCCTTGCATACTTTTTTTTGATGAGATTGATGCTTTGACAACCAAACGTGGTAAAGAAGGTGGTTGGGTTGTTGAACGACTATTGAACCAGTTGCTTGTTGAGTTAGATGGCGCTGAACAACGAAAAGGTGTTTTTGTGATTGGTGCTACAAATAGGCCTGAGGTGATGGATCGTGCTGTCCTACGGCCCGGAAGGTTTGGTAAACTTCTTTATGTTCCACTTCCAAGCCCAGATGAACGAGTTTTGATATTGAAAGCTCTTGCAAGGAAGAAGGCTGTTGATGCCTCTGTGGATTTGAGTGCCATAGCAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTGATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAGACAACTTGTGATACATTGACCATCAAGAGGACCATCAAGAGGCACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGGCAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGA
>Glyma08g19920.1 sequence type=predicted peptide gene model=Glyma08g19920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGRRNGGRSLQETLRRRLESCKSKYSTAEEFANHLRSTYPDYHRTKHQTLIRFVQEALHSTAKLNHTPTPKHCDGDDDDDEEGEAQSASRKRRKKIDGSEERLQRMEALHVRSKVQRSSSSSSASESDDEDEEETVSTSEDAIYGEKVEPEFDLMKTMLRKSYTPKKVAAEEKNVELEVGNSSKDTLVNEERKEVKGSSSGSVSNRKDGPRFKDLGGMKEVLEELKMEVIVPLFHPQLPRQLGVRPMAGILLHGPPGCGKTKLAHAIAHETGLPFYQISATEVVSGVSGASEENIRELFAKAYRSAPAIVFIDEIDAIASKRENLQREMEKRIVTQLMTCMDQSNRLLQPADDVESSGDDHHPGYVLVIGATNRPDAVDPALRRPGRFDREIIIGNPDESAREEILSVLTCDLRLEGLFDLRKIARATSGFVGADLAALVDKAGNLAMKRIIDERKRELSQDLTSEHAEDWWREPWSVEEINKLAIKMSDFEEAANKVQPSLRREGFSSIPNVKWDDVGGLDLLRKEFERYIVRRIKYPEDYEELGVDLETGFLLYGPPGCGKTLIAKAVANEAGATFIHIKGPELLNKYVGESELAVRTMFSRARTCAPCILFFDEIDALTTKRGKEGGWVVERLLNQLLVELDGAEQRKGVFVIGATNRPEVMDRAVLRPGRFGKLLYVPLPSPDERVLILKALARKKAVDASVDLSAIAKMEACENLSGADLAALMNEAAMAALEERLTSIETTCDTLTIKRTIKRHHFEVALSKVSPSVSDRQKQYYQHLSEGFKAA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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