SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G36090 | AT | Annotation by Michelle Graham. TAIR10: oxidoreductase, 2OG-Fe(II) oxygenase family protein | chr4:17078376-17080185 REVERSE LENGTH=452 | SoyBase | E_val: 3.00E-127 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| KOG4176 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR13069 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PTHR13069:SF2 | Panther | gb def: cg17807-pa [drosophila melanogaster] | JGI | ISS | |
| PF03171 | PFAM | 2OG-Fe(II) oxygenase superfamily | JGI | ISS | |
| UniRef100_A2Q3T7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 2OG-Fe(II) oxygenase n=1 Tax=Medicago truncatula RepID=A2Q3T7_MEDTR | SoyBase | E_val: 2.00E-174 | ISS |
| UniRef100_I1KUL8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUL8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g19890 not represented in the dataset |
Glyma08g19890 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g186500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g19890.2 sequence type=transcript gene model=Glyma08g19890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCAATGAATGTTATGTCTCTTTTAATATATTCTCTCTCCGTCGACTTGACTTGGCAAGTACTTCAGTCATCAATAATATCAGTATGGAAGTTGAAATCAGTGATGCTTTGCGGTGGCCATGGAGCTGCTCAGCTCTTTGAGGAAGGAGGACATACTGGAGCTCTTCTCTCATGGCTTCTGTTCCCACTGCGAGGATATTCTGCATACTCGAATTACAAACCTTCGTAAAAGAAAGTTGGATGAAACTTCATCTCCGGATGAAGAAGGCTTTGAATCTTCTGGGGATCATGTAGTAGACAAGCCAGTGAATATTGGTAATGTTTCAAATTCAGAATCTTTGACTAAAAACCATGAAAAACAATGGGATAGTCCTAGGAACTCCTCACAAAGGCGTGATTCTACTACACCAATGAAGGATGATATCAAAAACATTTTTTATTCTTCACCTAAGTGTTTAGTAGGCTGCAAACAATCTGATTTCAAGTTGTTGTTAAATGATGGAATTTGTGGAGATTCTTCATTTGAAAATGGTGGGTTATCAGAGGAAGAAAAGGAGCAGATCAGGTATTCTCAGGTTCACTGTAAAAAGGACTTTACCTTCGTTGAAAGGGTAAATAGGAGATACGTAAATGTACTCCGGGGGCTTGAACTTCACACTGGAGTTTTCAATGCTGTGGAGCAGAGGAAAATTGTTGAGTGGATTTACAGATTGCAATGGAGGGGACAACAAGGGAAACTGAAAGATCGAACATATTCAGAACCAAGAAAGTGGATGCGTGGTAAGGGCCGCGTGACAATACAATTTGGTTGCTGTTACAATTATGCAGTGGACAAAAATGGTAGCCCTCCTGGCATAATGAGAGATGAAGAGGTTGATCCATTACCACCTGTGTTCAAGCAAATGATAAAGAGGATGGTTAGGTGGAACATAATTCCTTCCACATGCATTCCTGATAGTTGCATTGTGAACATATACGAAGAAGGAGACTGCATTCCTCCTCATATTGACCATCACGATTTTGTGAGGCCATTTTACACTGTGTCATTCTTGAACGAGTGTAAAATATTATTTGGTTCAAATTTGCAAGTTGTTTGTCCTGGAGAATTTGCCGGTCCCGTTTCTATTCCTTTGCCTGTTGGGATAACAAGAGGAAGGCATTGTTTCATGTAAAATAAATTAATTTACTTCTTCTCTCAATGGAAGCTTTTGAAAGACAAAGAGGTCAACAAATTTGGACGGAGGTCCAGGCAAAATAGGTTTAGGGGGCTTGTTTTTAATTTTATTAATTCTAGTATCGCATGTGTTTAATTTTCACAGGTGACTTTTCTTAAATCTGCATCCAATCAAAATTGTTTATGGTTTGAAGGATCAAATGCTATGTGCCTATGTGTGAGGTTCTTATACTGTAATGTACTTTGTTAAAGGAAGTTGTTCATTACTTTGTACATATGGTTCAACTCGTTATTTTTCTCTGGAAAAAAAAGAGTATTCAACCCACTTACTTATTTTACAAATAGACATTTTAAACATTAATTTTGTGCCAATTGATCTTTATGCTTCATCTCTTTTGTAAATAGCCACCGTAAATTTTAATTTCGTTTAAATCAATTCTTAAATTTTATCTTTGCAC
>Glyma08g19890.1 sequence type=CDS gene model=Glyma08g19890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCTGCTCAGCTCTTTGAGGAAGGAGGACATACTGGAGCTCTTCTCTCATGGCTTCTGTTCCCACTGCGAGGATATTCTGCATACTCGAATTACAAACCTTCGTAAAAGAAAGTTGGATGAAACTTCATCTCCGGATGAAGAAGGCTTTGAATCTTCTGGGGATCATGTAGTAGACAAGCCAGTGAATATTGGTAATGTTTCAAATTCAGAATCTTTGACTAAAAACCATGAAAAACAATGGGATAGTCCTAGGAACTCCTCACAAAGGCGTGATTCTACTACACCAATGAAGGATGATATCAAAAACATTTTTTATTCTTCACCTAAGTGTTTAGTAGGCTGCAAACAATCTGATTTCAAGTTGTTGTTAAATGATGGAATTTGTGGAGATTCTTCATTTGAAAATGGTGGGTTATCAGAGGAAGAAAAGGAGCAGATCAGGTATTCTCAGGTTCACTGTAAAAAGGACTTTACCTTCGTTGAAAGGGTAAATAGGAGATACGTAAATGTACTCCGGGGGCTTGAACTTCACACTGGAGTTTTCAATGCTGTGGAGCAGAGGAAAATTGTTGAGTGGATTTACAGATTGCAATGGAGGGGACAACAAGGGAAACTGAAAGATCGAACATATTCAGAACCAAGAAAGTGGATGCGTGGTAAGGGCCGCGTGACAATACAATTTGGTTGCTGTTACAATTATGCAGTGGACAAAAATGGTAGCCCTCCTGGCATAATGAGAGATGAAGAGGTTGATCCATTACCACCTGTGTTCAAGCAAATGATAAAGAGGATGGTTAGGTGGAACATAATTCCTTCCACATGCATTCCTGATAGTTGCATTGTGAACATATACGAAGAAGGAGACTGCATTCCTCCTCATATTGACCATCACGATTTTGTGAGGCCATTTTACACTGTGTCATTCTTGAACGAGTGTAAAATATTATTTGGTTCAAATTTGCAAGTTGTTTGTCCTGGAGAATTTGCCGGTCCCGTTTCTATTCCTTTGCCTGTTGGATCAGTGTTTGTTTTGAATGGCAATGGAGCTGACATTGCTAAGCATTGTATTCCATCCGTGTCGTCAAAAAGAATTTCTATTACTTTTAGAAAGATGGACGAGAGCAAGTTACCATATAAGTTTTCACCTGATCCTGACTTAGTGGGAATCAAGCCACTTATAATTTCACCTCTAAACAAAGGACAAGATGAAGTTGGGAACCTAGATAATAAGGCTGACAGTGTTGAATCTGAATCTGATACAGGATAA >Glyma08g19890.2 sequence type=CDS gene model=Glyma08g19890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCTGCTCAGCTCTTTGAGGAAGGAGGACATACTGGAGCTCTTCTCTCATGGCTTCTGTTCCCACTGCGAGGATATTCTGCATACTCGAATTACAAACCTTCGTAAAAGAAAGTTGGATGAAACTTCATCTCCGGATGAAGAAGGCTTTGAATCTTCTGGGGATCATGTAGTAGACAAGCCAGTGAATATTGGTAATGTTTCAAATTCAGAATCTTTGACTAAAAACCATGAAAAACAATGGGATAGTCCTAGGAACTCCTCACAAAGGCGTGATTCTACTACACCAATGAAGGATGATATCAAAAACATTTTTTATTCTTCACCTAAGTGTTTAGTAGGCTGCAAACAATCTGATTTCAAGTTGTTGTTAAATGATGGAATTTGTGGAGATTCTTCATTTGAAAATGGTGGGTTATCAGAGGAAGAAAAGGAGCAGATCAGGTATTCTCAGGTTCACTGTAAAAAGGACTTTACCTTCGTTGAAAGGGTAAATAGGAGATACGTAAATGTACTCCGGGGGCTTGAACTTCACACTGGAGTTTTCAATGCTGTGGAGCAGAGGAAAATTGTTGAGTGGATTTACAGATTGCAATGGAGGGGACAACAAGGGAAACTGAAAGATCGAACATATTCAGAACCAAGAAAGTGGATGCGTGGTAAGGGCCGCGTGACAATACAATTTGGTTGCTGTTACAATTATGCAGTGGACAAAAATGGTAGCCCTCCTGGCATAATGAGAGATGAAGAGGTTGATCCATTACCACCTGTGTTCAAGCAAATGATAAAGAGGATGGTTAGGTGGAACATAATTCCTTCCACATGCATTCCTGATAGTTGCATTGTGAACATATACGAAGAAGGAGACTGCATTCCTCCTCATATTGACCATCACGATTTTGTGAGGCCATTTTACACTGTGTCATTCTTGAACGAGTGTAAAATATTATTTGGTTCAAATTTGCAAGTTGTTTGTCCTGGAGAATTTGCCGGTCCCGTTTCTATTCCTTTGCCTGTTGGGATAACAAGAGGAAGGCATTGTTTCATGTAA
>Glyma08g19890.1 sequence type=predicted peptide gene model=Glyma08g19890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MELLSSLRKEDILELFSHGFCSHCEDILHTRITNLRKRKLDETSSPDEEGFESSGDHVVDKPVNIGNVSNSESLTKNHEKQWDSPRNSSQRRDSTTPMKDDIKNIFYSSPKCLVGCKQSDFKLLLNDGICGDSSFENGGLSEEEKEQIRYSQVHCKKDFTFVERVNRRYVNVLRGLELHTGVFNAVEQRKIVEWIYRLQWRGQQGKLKDRTYSEPRKWMRGKGRVTIQFGCCYNYAVDKNGSPPGIMRDEEVDPLPPVFKQMIKRMVRWNIIPSTCIPDSCIVNIYEEGDCIPPHIDHHDFVRPFYTVSFLNECKILFGSNLQVVCPGEFAGPVSIPLPVGSVFVLNGNGADIAKHCIPSVSSKRISITFRKMDESKLPYKFSPDPDLVGIKPLIISPLNKGQDEVGNLDNKADSVESESDTG* >Glyma08g19890.2 sequence type=predicted peptide gene model=Glyma08g19890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MELLSSLRKEDILELFSHGFCSHCEDILHTRITNLRKRKLDETSSPDEEGFESSGDHVVDKPVNIGNVSNSESLTKNHEKQWDSPRNSSQRRDSTTPMKDDIKNIFYSSPKCLVGCKQSDFKLLLNDGICGDSSFENGGLSEEEKEQIRYSQVHCKKDFTFVERVNRRYVNVLRGLELHTGVFNAVEQRKIVEWIYRLQWRGQQGKLKDRTYSEPRKWMRGKGRVTIQFGCCYNYAVDKNGSPPGIMRDEEVDPLPPVFKQMIKRMVRWNIIPSTCIPDSCIVNIYEEGDCIPPHIDHHDFVRPFYTVSFLNECKILFGSNLQVVCPGEFAGPVSIPLPVGITRGRHCFM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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