Glyma08g19890 - SoyBase

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Report for Sequence Feature Glyma08g19890

Feature Type:	gene_model
Chromosome:	Gm08
Start:	15015831
stop:	15019674
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g19890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G36090	AT	Annotation by Michelle Graham. TAIR10: oxidoreductase, 2OG-Fe(II) oxygenase family protein \| chr4:17078376-17080185 REVERSE LENGTH=452	SoyBase	E_val: 3.00E-127	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
KOG4176	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR13069	Panther	UNCHARACTERIZED	JGI		ISS
PTHR13069:SF2	Panther	gb def: cg17807-pa [drosophila melanogaster]	JGI		ISS
PF03171	PFAM	2OG-Fe(II) oxygenase superfamily	JGI		ISS
UniRef100_A2Q3T7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 2OG-Fe(II) oxygenase n=1 Tax=Medicago truncatula RepID=A2Q3T7_MEDTR	SoyBase	E_val: 2.00E-174	ISS
UniRef100_I1KUL8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUL8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g19890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g19890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g186500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g19890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g19890

Limit To All Plant Sequences

>Glyma08g19890.2   sequence type=transcript   gene model=Glyma08g19890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCAATGAATGTTATGTCTCTTTTAATATATTCTCTCTCCGTCGACTTGACTTGGCAAGTACTTCAGTCATCAATAATATCAGTATGGAAGTTGAAATCAGTGATGCTTTGCGGTGGCCATGGAGCTGCTCAGCTCTTTGAGGAAGGAGGACATACTGGAGCTCTTCTCTCATGGCTTCTGTTCCCACTGCGAGGATATTCTGCATACTCGAATTACAAACCTTCGTAAAAGAAAGTTGGATGAAACTTCATCTCCGGATGAAGAAGGCTTTGAATCTTCTGGGGATCATGTAGTAGACAAGCCAGTGAATATTGGTAATGTTTCAAATTCAGAATCTTTGACTAAAAACCATGAAAAACAATGGGATAGTCCTAGGAACTCCTCACAAAGGCGTGATTCTACTACACCAATGAAGGATGATATCAAAAACATTTTTTATTCTTCACCTAAGTGTTTAGTAGGCTGCAAACAATCTGATTTCAAGTTGTTGTTAAATGATGGAATTTGTGGAGATTCTTCATTTGAAAATGGTGGGTTATCAGAGGAAGAAAAGGAGCAGATCAGGTATTCTCAGGTTCACTGTAAAAAGGACTTTACCTTCGTTGAAAGGGTAAATAGGAGATACGTAAATGTACTCCGGGGGCTTGAACTTCACACTGGAGTTTTCAATGCTGTGGAGCAGAGGAAAATTGTTGAGTGGATTTACAGATTGCAATGGAGGGGACAACAAGGGAAACTGAAAGATCGAACATATTCAGAACCAAGAAAGTGGATGCGTGGTAAGGGCCGCGTGACAATACAATTTGGTTGCTGTTACAATTATGCAGTGGACAAAAATGGTAGCCCTCCTGGCATAATGAGAGATGAAGAGGTTGATCCATTACCACCTGTGTTCAAGCAAATGATAAAGAGGATGGTTAGGTGGAACATAATTCCTTCCACATGCATTCCTGATAGTTGCATTGTGAACATATACGAAGAAGGAGACTGCATTCCTCCTCATATTGACCATCACGATTTTGTGAGGCCATTTTACACTGTGTCATTCTTGAACGAGTGTAAAATATTATTTGGTTCAAATTTGCAAGTTGTTTGTCCTGGAGAATTTGCCGGTCCCGTTTCTATTCCTTTGCCTGTTGGGATAACAAGAGGAAGGCATTGTTTCATGTAAAATAAATTAATTTACTTCTTCTCTCAATGGAAGCTTTTGAAAGACAAAGAGGTCAACAAATTTGGACGGAGGTCCAGGCAAAATAGGTTTAGGGGGCTTGTTTTTAATTTTATTAATTCTAGTATCGCATGTGTTTAATTTTCACAGGTGACTTTTCTTAAATCTGCATCCAATCAAAATTGTTTATGGTTTGAAGGATCAAATGCTATGTGCCTATGTGTGAGGTTCTTATACTGTAATGTACTTTGTTAAAGGAAGTTGTTCATTACTTTGTACATATGGTTCAACTCGTTATTTTTCTCTGGAAAAAAAAGAGTATTCAACCCACTTACTTATTTTACAAATAGACATTTTAAACATTAATTTTGTGCCAATTGATCTTTATGCTTCATCTCTTTTGTAAATAGCCACCGTAAATTTTAATTTCGTTTAAATCAATTCTTAAATTTTATCTTTGCAC

Coding sequences of Glyma08g19890

Limit To All Plant Sequences

>Glyma08g19890.1   sequence type=CDS   gene model=Glyma08g19890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCTGCTCAGCTCTTTGAGGAAGGAGGACATACTGGAGCTCTTCTCTCATGGCTTCTGTTCCCACTGCGAGGATATTCTGCATACTCGAATTACAAACCTTCGTAAAAGAAAGTTGGATGAAACTTCATCTCCGGATGAAGAAGGCTTTGAATCTTCTGGGGATCATGTAGTAGACAAGCCAGTGAATATTGGTAATGTTTCAAATTCAGAATCTTTGACTAAAAACCATGAAAAACAATGGGATAGTCCTAGGAACTCCTCACAAAGGCGTGATTCTACTACACCAATGAAGGATGATATCAAAAACATTTTTTATTCTTCACCTAAGTGTTTAGTAGGCTGCAAACAATCTGATTTCAAGTTGTTGTTAAATGATGGAATTTGTGGAGATTCTTCATTTGAAAATGGTGGGTTATCAGAGGAAGAAAAGGAGCAGATCAGGTATTCTCAGGTTCACTGTAAAAAGGACTTTACCTTCGTTGAAAGGGTAAATAGGAGATACGTAAATGTACTCCGGGGGCTTGAACTTCACACTGGAGTTTTCAATGCTGTGGAGCAGAGGAAAATTGTTGAGTGGATTTACAGATTGCAATGGAGGGGACAACAAGGGAAACTGAAAGATCGAACATATTCAGAACCAAGAAAGTGGATGCGTGGTAAGGGCCGCGTGACAATACAATTTGGTTGCTGTTACAATTATGCAGTGGACAAAAATGGTAGCCCTCCTGGCATAATGAGAGATGAAGAGGTTGATCCATTACCACCTGTGTTCAAGCAAATGATAAAGAGGATGGTTAGGTGGAACATAATTCCTTCCACATGCATTCCTGATAGTTGCATTGTGAACATATACGAAGAAGGAGACTGCATTCCTCCTCATATTGACCATCACGATTTTGTGAGGCCATTTTACACTGTGTCATTCTTGAACGAGTGTAAAATATTATTTGGTTCAAATTTGCAAGTTGTTTGTCCTGGAGAATTTGCCGGTCCCGTTTCTATTCCTTTGCCTGTTGGATCAGTGTTTGTTTTGAATGGCAATGGAGCTGACATTGCTAAGCATTGTATTCCATCCGTGTCGTCAAAAAGAATTTCTATTACTTTTAGAAAGATGGACGAGAGCAAGTTACCATATAAGTTTTCACCTGATCCTGACTTAGTGGGAATCAAGCCACTTATAATTTCACCTCTAAACAAAGGACAAGATGAAGTTGGGAACCTAGATAATAAGGCTGACAGTGTTGAATCTGAATCTGATACAGGATAA

>Glyma08g19890.2   sequence type=CDS   gene model=Glyma08g19890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCTGCTCAGCTCTTTGAGGAAGGAGGACATACTGGAGCTCTTCTCTCATGGCTTCTGTTCCCACTGCGAGGATATTCTGCATACTCGAATTACAAACCTTCGTAAAAGAAAGTTGGATGAAACTTCATCTCCGGATGAAGAAGGCTTTGAATCTTCTGGGGATCATGTAGTAGACAAGCCAGTGAATATTGGTAATGTTTCAAATTCAGAATCTTTGACTAAAAACCATGAAAAACAATGGGATAGTCCTAGGAACTCCTCACAAAGGCGTGATTCTACTACACCAATGAAGGATGATATCAAAAACATTTTTTATTCTTCACCTAAGTGTTTAGTAGGCTGCAAACAATCTGATTTCAAGTTGTTGTTAAATGATGGAATTTGTGGAGATTCTTCATTTGAAAATGGTGGGTTATCAGAGGAAGAAAAGGAGCAGATCAGGTATTCTCAGGTTCACTGTAAAAAGGACTTTACCTTCGTTGAAAGGGTAAATAGGAGATACGTAAATGTACTCCGGGGGCTTGAACTTCACACTGGAGTTTTCAATGCTGTGGAGCAGAGGAAAATTGTTGAGTGGATTTACAGATTGCAATGGAGGGGACAACAAGGGAAACTGAAAGATCGAACATATTCAGAACCAAGAAAGTGGATGCGTGGTAAGGGCCGCGTGACAATACAATTTGGTTGCTGTTACAATTATGCAGTGGACAAAAATGGTAGCCCTCCTGGCATAATGAGAGATGAAGAGGTTGATCCATTACCACCTGTGTTCAAGCAAATGATAAAGAGGATGGTTAGGTGGAACATAATTCCTTCCACATGCATTCCTGATAGTTGCATTGTGAACATATACGAAGAAGGAGACTGCATTCCTCCTCATATTGACCATCACGATTTTGTGAGGCCATTTTACACTGTGTCATTCTTGAACGAGTGTAAAATATTATTTGGTTCAAATTTGCAAGTTGTTTGTCCTGGAGAATTTGCCGGTCCCGTTTCTATTCCTTTGCCTGTTGGGATAACAAGAGGAAGGCATTGTTTCATGTAA

Predicted protein sequences of Glyma08g19890

Limit To All Plant Sequences

>Glyma08g19890.1   sequence type=predicted peptide   gene model=Glyma08g19890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELLSSLRKEDILELFSHGFCSHCEDILHTRITNLRKRKLDETSSPDEEGFESSGDHVVDKPVNIGNVSNSESLTKNHEKQWDSPRNSSQRRDSTTPMKDDIKNIFYSSPKCLVGCKQSDFKLLLNDGICGDSSFENGGLSEEEKEQIRYSQVHCKKDFTFVERVNRRYVNVLRGLELHTGVFNAVEQRKIVEWIYRLQWRGQQGKLKDRTYSEPRKWMRGKGRVTIQFGCCYNYAVDKNGSPPGIMRDEEVDPLPPVFKQMIKRMVRWNIIPSTCIPDSCIVNIYEEGDCIPPHIDHHDFVRPFYTVSFLNECKILFGSNLQVVCPGEFAGPVSIPLPVGSVFVLNGNGADIAKHCIPSVSSKRISITFRKMDESKLPYKFSPDPDLVGIKPLIISPLNKGQDEVGNLDNKADSVESESDTG*

>Glyma08g19890.2   sequence type=predicted peptide   gene model=Glyma08g19890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELLSSLRKEDILELFSHGFCSHCEDILHTRITNLRKRKLDETSSPDEEGFESSGDHVVDKPVNIGNVSNSESLTKNHEKQWDSPRNSSQRRDSTTPMKDDIKNIFYSSPKCLVGCKQSDFKLLLNDGICGDSSFENGGLSEEEKEQIRYSQVHCKKDFTFVERVNRRYVNVLRGLELHTGVFNAVEQRKIVEWIYRLQWRGQQGKLKDRTYSEPRKWMRGKGRVTIQFGCCYNYAVDKNGSPPGIMRDEEVDPLPPVFKQMIKRMVRWNIIPSTCIPDSCIVNIYEEGDCIPPHIDHHDFVRPFYTVSFLNECKILFGSNLQVVCPGEFAGPVSIPLPVGITRGRHCFM*

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