Glyma08g19850 - SoyBase

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Report for Sequence Feature Glyma08g19850

Feature Type:	gene_model
Chromosome:	Gm08
Start:	14980146
stop:	14985341
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g19850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G10890	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: petal, flower, leaf; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13340.1); Has 11769 Blast hits to 8435 proteins in 698 species: Archae - 22; Bacteria - 971; Metazoa - 5937; Fungi - 1065; Plants - 592; Viruses - 101; Other Eukaryotes -	SoyBase	E_val: 1.00E-64	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_A2Q3T8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal protein S7 n=1 Tax=Medicago truncatula RepID=A2Q3T8_MEDTR	SoyBase	E_val: 2.00E-90	ISS
UniRef100_I1MDP0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MDP0_SOYBN	SoyBase	E_val: 9.00E-105	ISS

Expression Patterns of Glyma08g19850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g19850

Paralog	Evidence	Comments
Glyma15g05170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g19850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g186200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g19850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g19850

Limit To All Plant Sequences

>Glyma08g19850.2   sequence type=transcript   gene model=Glyma08g19850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAAAAATAGAAAAAAGTATTTTGGTCCACCTTCCTTCTTCTATCGTCGTTGTCTTCCTTCCTCCATCGTGTTAGGGTTTCCACTTTGCAGAGTTTCAATTTACTCTCATTATCATATCGCAATTCCTCCGTGTTTCTGTTTTGATAACTCGTAAAAATCCTACTCCATAGCACCATATCTCGTTCCCTGAATACTGATTTTGAACTTCCCCTGATTTTTTTTTCAGGGAAACAAATTATTGCCCCTTCCTCTCTTTTCCAATCATCTCCAGTGAAAAAAAAAAACAATACAAAAACTATATCTGAAACTTATTGGGGATCAGGTATTGGGAGATGCCTCGAGACTTGTCGCGATCCCGATCACCTCCCTATAGGCGGAGGCATTCACCATCTCCTGTGGGACACAGGTATAGCAGGAGGAGCAGAAGAGACAGAAGCAGATCTCCTTATTCATCCTACTCTTACAACAGGTGACCCCGTTCATAAGTTTGTTTTTGCTTATGATATATTTTGTATCGAGTTATGATGAATTGGGGATTAATGTTTTTACAAATTTATTTGTTATGTAACTTAAACCTTTTATTTATCTATATTTTGTTGCTGTTCTCTTTTATAATGTAATTGTAAACTGTACTCTTTGGACATACCAAGGAGGCGAGGACATTAAACAGTTATAGACTTATAATATTTTATATCTACCAAATTAGAATTCTGGATTAGACTTGAACTTGAGATCATGGCGAGGGTTATGTTATTGGCTTGGGCATAATGTATAAAACAATGTGTTTTAGTGACCTTTTTTTTCCCTTTCCATTATGTTAATGCTGTATTTAGATGTCATTTAAAAAAAATATTTTCTTTGTTTGAGTATTTTTCTAGAACTGACTATTTTTTTGTTTGAAGAAATGAACATGACATTTCCAGGATTACAGAGCTATGGTATTTTAATGACCAAAGCACGTAGGTTGAAGTTGAATCACATGGTTGATAATGCTAGTTATTTATGGATTGTTATTTAAATTCAATATCTACTTGGTATTTGCTTATGATTCACCTCCTTTTTTGTACATGCTCAAGTGAACAAGAATGGACAGTTATATTTCTGTTATTATGCTGTTTGTCTTTTTCTGTTAAGCTCCTTGAGCCAATCAACGAGATACATACTGTTTTTGCTGGATGATTGATATTGATAATATTCAAGTATTTGATGGCCTTGTCATAAGTATCTGGTGATGGTGTTGCTGACTTTGTAAGACTTTGTATTGAGTTTCTTTCTTTTGTGGGATTTCCTACTTATATGTGGAGGCAGAAACTCATCAAAATAACACATATAGAGCTTAATTTAGAGAACAAGATAGGATATATGCTATTTGTAACAAAATAAAAAAGATCAGTTTTTTCCCATAACATGGGAAGTGAGGGATATGAACAGGTGATGGGTGCTGATAGGGTGTTTTTTCATTGCTCGATTGTGACATTTGCTTCTTCATGTGATAAAAGATGGAGCACACAATGGTTATTCTTAGCAATTTCTGAGGTAACTGTACATGTTTTTGTATTTAGTGTGCTAGATGGTGGGAAGCATTTATATTCTCTAAAGATAGCTTTTTTGTTGCTGAGGTTCATTGCTTATGATCATGTGTCATCATACAGGCGAAAAAGTCGTTCTATTTCACCAAGAGGTCACAGAAGTCCTTCTACTACTCCAAGACGTCGTAGAAGCCGAACTCCATCTGCTAAACGATACAGAAGACATAGAAGTAGGAGTTCCTCGTTGTCTCCTACTCGTAAATCTTCCAGTCCAAGTCTTGGGTCAGTAGAGCACAAAAGTGCCACTGAAAAACTAAAGAAAGAAGAAGAGAAGAAAAGGCGTCAACTAGAAGCAGAGTTGAAATTAATAGAAGAAGAGACTGCAAAGAGAGTTGAAGAAGCAATCCGTAAGAGAGTTGAAGAAAGCTTGAAATCTGAGGAGGTTCAGGTGGAGATTGAAAGGCGGTTGGAAGAGGGACGGAAGAGACTTAATGATGAAGTTGCAGCTCAACTTGAAAAAGAAAAGGAAGCTGCTATTATTGAGGCTAAACAGAAGGAGGAGCAAGCCCGTAAAGAGAAAGAAGATCTTGAAAGGATGCTTGAGGAGAACCGGAGGAAGGTTGAAGAAGCTCAGAGAAGGGAAGCTTTAGAGCAGCAAAGAAGGGAGGAAGAAAGATATAAAGAGCTAGAAGAGATGCAAAGACAGAAGGAAGAAGCCATGCGAAGGAAGAAACACGAGGAGGAGCAAGAACGTCTAAACCAAATAAAGTTGTTGGGTAAAAACAAATCCCGACCAAAATTGTCATTTGCTCTTGGATCCAAATGACCATGGGCTTCGGCAACATGTGTCTATTTATTTAGTCTAAAGTGTGTATGGGCTTAATTTAATTCCCTATTTGTGTCTGTAATTTGAGGAAATTATACAGCCCTCCTCAGCTATAGTGTGACAGCGTTGTTACTGTTTCCAGTTTGCATTAGATTTCATTGTTTGTCATTGCCACAAAATTCTCCATTTACGCGTCCATGGTTATCATACTTTCGCCTTAACATCACAAACTTGAGTAGTGACTCTGTTCGTTTTTGGTTTTTAACGATGGTGGTTGACTTGTGTGATAGCAACATTGAAAGAGCAGACCTG

>Glyma08g19850.3   sequence type=transcript   gene model=Glyma08g19850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCACAGGCTTGTCTGAAGCAAGGTACTGCTATAATTGGACTTGTTATGTTTGATGATCAAATTCGCTGCCTCATTTATCTACTGTTCACCAGTTTTGAAACTCATTTGTTTGGATCAGGATTCAATAGAGGTATGCCTTAAAAGCATAACCATTTAATAGTGCCATTGTCATCATGGAGGTTAGTTTGCCGTTGATTGTGGTTTTCTATCAAGTAGTTTAGGAAAAGGTAAAAAGAAAAAGGGAGAAAAAATGCAGAAGACATGTCTCATGTCTATTGTCCAGTTTATATGTTATTTGCCTACTATGAAAAACATCAAGTCCACTTATGTGGCATTTCCCAGTTCAAGAGGCCATTTTTCCTGCTTAACATTTTGTATGTTTTCACAGGCGTCAACTAGAAGCAGAGTTGAAATTAATAGAAGAAGAGACTGCAAAGAGAGTTGAAGAAGCAATCCGTAAGAGAGTTGAAGAAAGCTTGAAATCTGAGGAGGTTCAGGTGGAGATTGAAAGGCGGTTGGAAGAGGGACGGAAGAGACTTAATGATGAAGTTGCAGCTCAACTTGAAAAAGAAAAGGAAGCTGCTATTATTGAGGCTAAACAGAAGGAGGAGCAAGCCCGTAAAGAGAAAGAAGATCTTGAAAGGATGCTTGAGGAGAACCGGAGGAAGGTTGAAGAAGCTCAGAGAAGGGAAGCTTTAGAGCAGCAAAGAAGGGAGGAAGAAAGATATAAAGAGCTAGAAGAGATGCAAAGACAGAAGGAAGAAGCCATGCGAAGGAAGAAACACGAGGAGGAGCAAGAACGTCTAAACCAAATAAAGTTGTTGGGTAAAAACAAATCCCGACCAAAATTGTCATTTGCTCTTGGATCCAAATGACCATGGGCTTCGGCAACATGTGTCTATTTATTTAGTCTAAAGTGTGTATGGGCTTAATTTAATTCCCTATTTGTGTCTGTAATTTGAGGAAATTATACAGCCCTCCTCAGCTATAGTGTGACAGCGTTGTTACTGTTTCCAGTTTGCATTAGATTTCATTGTTTGTCATTGCCACAAAATTCTCCATTTACGCGTCCATGGTTATCATACTTTCGCCTTAACATCACAAACTTGAGTAGTGACTCTGTTCGTTTTTGGTTTTTAACGATGGTGGTTGA

Coding sequences of Glyma08g19850

Limit To All Plant Sequences

>Glyma08g19850.1   sequence type=CDS   gene model=Glyma08g19850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCGAGACTTGTCGCGATCCCGATCACCTCCCTATAGGCGGAGGCATTCACCATCTCCTGTGGGACACAGGTATAGCAGGAGGAGCAGAAGAGACAGAAGCAGATCTCCTTATTCATCCTACTCTTACAACAGGCGAAAAAGTCGTTCTATTTCACCAAGAGGTCACAGAAGTCCTTCTACTACTCCAAGACGTCGTAGAAGCCGAACTCCATCTGCTAAACGATACAGAAGACATAGAAGTAGGAGTTCCTCGTTGTCTCCTACTCGTAAATCTTCCAGTCCAAGTCTTGGGTCAGTAGAGCACAAAAGTGCCACTGAAAAACTAAAGAAAGAAGAAGAGAAGAAAAGGCGTCAACTAGAAGCAGAGTTGAAATTAATAGAAGAAGAGACTGCAAAGAGAGTTGAAGAAGCAATCCGTAAGAGAGTTGAAGAAAGCTTGAAATCTGAGGAGGTTCAGGTGGAGATTGAAAGGCGGTTGGAAGAGGGACGGAAGAGACTTAATGATGAAGTTGCAGCTCAACTTGAAAAAGAAAAGGAAGCTGCTATTATTGAGGCTAAACAGAAGGAGGAGCAAGCCCGTAAAGAGAAAGAAGATCTTGAAAGGATGCTTGAGGAGAACCGGAGGAAGGTTGAAGAAGCTCAGAGAAGGGAAGCTTTAGAGCAGCAAAGAAGGGAGGAAGAAAGATATAAAGAGCTAGAAGAGATGCAAAGACAGAAGGAAGAAGCCATGCGAAGGAAGAAACACGAGGAGGAGCAAGAACGTCTAAACCAAATAAAGTTGTTGGGTAAAAACAAATCCCGACCAAAATTGTCATTTGCTCTTGGATCCAAATGA

>Glyma08g19850.2   sequence type=CDS   gene model=Glyma08g19850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGTGAGGGATATGAACAGGTGATGGGTGCTGATAGGGTGTTTTTTCATTGCTCGATTGTGACATTTGCTTCTTCATGTGATAAAAGATGGAGCACACAATGGTTATTCTTAGCAATTTCTGAGGTAACTGTACATGTTTTTGTATTTAGTGTGCTAGATGGTGGGAAGCATTTATATTCTCTAAAGATAGCTTTTTTGTTGCTGAGGTTCATTGCTTATGATCATGTGTCATCATACAGGCGAAAAAGTCGTTCTATTTCACCAAGAGGTCACAGAAGTCCTTCTACTACTCCAAGACGTCGTAGAAGCCGAACTCCATCTGCTAAACGATACAGAAGACATAGAAGTAGGAGTTCCTCGTTGTCTCCTACTCGTAAATCTTCCAGTCCAAGTCTTGGGTCAGTAGAGCACAAAAGTGCCACTGAAAAACTAAAGAAAGAAGAAGAGAAGAAAAGGCGTCAACTAGAAGCAGAGTTGAAATTAATAGAAGAAGAGACTGCAAAGAGAGTTGAAGAAGCAATCCGTAAGAGAGTTGAAGAAAGCTTGAAATCTGAGGAGGTTCAGGTGGAGATTGAAAGGCGGTTGGAAGAGGGACGGAAGAGACTTAATGATGAAGTTGCAGCTCAACTTGAAAAAGAAAAGGAAGCTGCTATTATTGAGGCTAAACAGAAGGAGGAGCAAGCCCGTAAAGAGAAAGAAGATCTTGAAAGGATGCTTGAGGAGAACCGGAGGAAGGTTGAAGAAGCTCAGAGAAGGGAAGCTTTAGAGCAGCAAAGAAGGGAGGAAGAAAGATATAAAGAGCTAGAAGAGATGCAAAGACAGAAGGAAGAAGCCATGCGAAGGAAGAAACACGAGGAGGAGCAAGAACGTCTAAACCAAATAAAGTTGTTGGGTAAAAACAAATCCCGACCAAAATTGTCATTTGCTCTTGGATCCAAATGA

>Glyma08g19850.3   sequence type=CDS   gene model=Glyma08g19850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTGAGGAGAACCGGAGGAAGGTTGAAGAAGCTCAGAGAAGGGAAGCTTTAGAGCAGCAAAGAAGGGAGGAAGAAAGATATAAAGAGCTAGAAGAGATGCAAAGACAGAAGGAAGAAGCCATGCGAAGGAAGAAACACGAGGAGGAGCAAGAACGTCTAAACCAAATAAAGTTGTTGGGTAAAAACAAATCCCGACCAAAATTGTCATTTGCTCTTGGATCCAAATGA

Predicted protein sequences of Glyma08g19850

Limit To All Plant Sequences

>Glyma08g19850.1   sequence type=predicted peptide   gene model=Glyma08g19850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPRDLSRSRSPPYRRRHSPSPVGHRYSRRSRRDRSRSPYSSYSYNRRKSRSISPRGHRSPSTTPRRRRSRTPSAKRYRRHRSRSSSLSPTRKSSSPSLGSVEHKSATEKLKKEEEKKRRQLEAELKLIEEETAKRVEEAIRKRVEESLKSEEVQVEIERRLEEGRKRLNDEVAAQLEKEKEAAIIEAKQKEEQARKEKEDLERMLEENRRKVEEAQRREALEQQRREEERYKELEEMQRQKEEAMRRKKHEEEQERLNQIKLLGKNKSRPKLSFALGSK*

>Glyma08g19850.2   sequence type=predicted peptide   gene model=Glyma08g19850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSEGYEQVMGADRVFFHCSIVTFASSCDKRWSTQWLFLAISEVTVHVFVFSVLDGGKHLYSLKIAFLLLRFIAYDHVSSYRRKSRSISPRGHRSPSTTPRRRRSRTPSAKRYRRHRSRSSSLSPTRKSSSPSLGSVEHKSATEKLKKEEEKKRRQLEAELKLIEEETAKRVEEAIRKRVEESLKSEEVQVEIERRLEEGRKRLNDEVAAQLEKEKEAAIIEAKQKEEQARKEKEDLERMLEENRRKVEEAQRREALEQQRREEERYKELEEMQRQKEEAMRRKKHEEEQERLNQIKLLGKNKSRPKLSFALGSK*

>Glyma08g19850.3   sequence type=predicted peptide   gene model=Glyma08g19850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLEENRRKVEEAQRREALEQQRREEERYKELEEMQRQKEEAMRRKKHEEEQERLNQIKLLGKNKSRPKLSFALGSK*

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