Report for Sequence Feature Glyma08g19840
Feature Type: gene_model
Chromosome: Gm08
Start: 14970602
stop: 14973509
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g19840
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G09580 AT
Annotation by Michelle Graham. TAIR10: emp24/gp25L/p24 family/GOLD family protein | chr1:3104657-3106092 FORWARD LENGTH=217
SoyBase E_val: 5.00E-93 ISS
GO:0006810 GO-bp
Annotation by Michelle Graham. GO Biological Process: transport
SoyBase N/A ISS
GO:0006886 GO-bp
Annotation by Michelle Graham. GO Biological Process: intracellular protein transport
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0016021 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane
SoyBase N/A ISS
GO:0008320 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein transmembrane transporter activity
SoyBase N/A ISS
KOG1691
KOG
emp24/gp25L/p24 family of membrane trafficking proteins
JGI ISS
PTHR22811 Panther
COPII-COATED VESICLE MEMBRANE PROTEIN
JGI ISS
PTHR22811:SF5 Panther
EMP24/GP25L-RELATED
JGI ISS
PF01105 PFAM
emp24/gp25L/p24 family/GOLD
JGI ISS
UniRef100_A2Q3U2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Emp24/gp25L/p24 n=1 Tax=Medicago truncatula RepID=A2Q3U2_MEDTR
SoyBase E_val: 2.00E-104 ISS
UniRef100_UPI0002338860 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002338860 related cluster n=1 Tax=unknown RepID=UPI0002338860
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g19840
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g19840
Paralog Evidence Comments
Glyma15g05190 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g19840 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g186000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g19840
Coding sequences of Glyma08g19840
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g19840.2 sequence type=CDS gene model=Glyma08g19840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTACTACGTTGTTGGCCACATCGGAAGAACCTCAAATCAAAATTAGATCGATCGAACGAAGGAGAGGTTGATTTCACAAACAGTGTGTGTGTGGAGAAGAGAGCTATGTCAATGTCAATGTTAATTGTCTTCCTCTTCTTCTTCTCGTTCTTCTTCTCAACCTCTGGGGCTCTCGGGCTGACCATACCACCCTCCGGCACCAAGTGCGTTTCTGAAGAAATCCATAACAACGTCGTCGTTTTGGGCGATTACGCTGTCGTCACCACTGGGAATGATCATTCCCATAACTCCACCATTTCCGTCAAGGTCACATCACCATATGGAAACAATCTTCATCATATGGAGAACATATCAATTGGTAATTTCGCCTTTACAACTCGAGAAAGTGGAAACTACTTAGCATGTTTCTGGCTGGGTCATAATGAACGAGGTGGAGACGTTAGTGTGAACCTTGATTGGAAAACTGGAATTGCAGCCAAGGATTGGGATTCGGTTGCTAAAAAGGAGAAGATTGAGGGAATAGAGCTTCAGTTGAGAAAGCTAGAAGGAACAGTGGAGGCTGTCCACGAGAATTTGATCTTTCTGAGGGGCAGGGAAGCAGAGATAAGGAACGTGAGTGAGTCCACAAATGCCAGAGTGGCGTGGTTTAGTTTTATGTCCTTGGGTGTCTGCATTGCAGTTTCAGTTCTGCAGTTGTGGCATTTGAAGCGATACTTCCACAAGAAAAAGCTTATTTAG
Predicted protein sequences of Glyma08g19840
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g19840.2 sequence type=predicted peptide gene model=Glyma08g19840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLLRCWPHRKNLKSKLDRSNEGEVDFTNSVCVEKRAMSMSMLIVFLFFFSFFFSTSGALGLTIPPSGTKCVSEEIHNNVVVLGDYAVVTTGNDHSHNSTISVKVTSPYGNNLHHMENISIGNFAFTTRESGNYLACFWLGHNERGGDVSVNLDWKTGIAAKDWDSVAKKEKIEGIELQLRKLEGTVEAVHENLIFLRGREAEIRNVSESTNARVAWFSFMSLGVCIAVSVLQLWHLKRYFHKKKLI*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
