Report for Sequence Feature Glyma08g19800
Feature Type: gene_model
Chromosome: Gm08
Start: 14948830
stop: 14959699
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g19800
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G71240 AT
Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF639) | chr1:26855489-26859599 FORWARD LENGTH=823
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF04842 PFAM
Plant protein of unknown function (DUF639)
JGI ISS
UniRef100_I1KUL0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUL0_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q9LS55 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Gb|AAD20392.1 n=1 Tax=Arabidopsis thaliana RepID=Q9LS55_ARATH
SoyBase E_val: 2.00E-74 ISS
Expression Patterns of Glyma08g19800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g19800
Paralog Evidence Comments
Glyma15g05220 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g19800 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g185700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g19800
Coding sequences of Glyma08g19800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g19800.1 sequence type=CDS gene model=Glyma08g19800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGGTCAAAGTTTCCGATGACCCAGTTGGGGACATCGCCCGGGTATATGATTTCTCCCCACAGAGATTTTTGTGTGTACAGCAAGTATTCCAGAAGAATATCCTCGGAGCAAAAGTTCCCATTTAAGTTCGTGGCGCAGTCTTTAGGGCATAAATGGAAGCTAAATGACATAAGTACTAGTTCTATTCAAGAAAGATTGAATGTATTGATGTCGAGGACCCAAAATTTTTGGAATGAAGTTACTTTTCCACTTGCAAAACCTGGTCAAAGTAGGAAGCCTGATACTGAAAATGATTGTGGATTTCAAGTTATGGAAGACATATTCATGATAGAGCAGACAATGGACCGTAGAACACCTTGTGGGGTTCTTTCTCTAGCTGTTGTGATTTGTATTGAACAATTCAGCAGGATGAATGGATTGACCGGGAAGAAAATGCAGAAAATTTTTGAAGCACTTGTGCCTGAATCTGTATATAATGATGCCCGTAATTTGGTTGAATATTGCTGCTTTAGATTTTTGTCAAGGGATGGTTCTGATATTCATCCTTCCCTCCAGGACCCTGCATTCCAGAGGCTGATATTCATAACCATGCTTGCCTGGGAAAATCCTTACACTAATGACCTTTCCAGCAATTCAGAGAAGGCTTCTTTACAGAATAAACTTGTCACTGAGGAGGCTTTTGTTCGTCTTGCTCCTGCAATCTCTGGTGTTGTTGACCGTCCCACAGTGCACAATCTTTTTAAGGCACTTGCTGGTGATCAAGAGGGCATTTCTGTGAGCTCGTGGCTGAATTACATTAATGAATTTGTCAAAGTGCGTCAAAAACTGATATCATATCAGATTCCAGAGTTTCCTCAACTTTCTGAGGAGAGAATTTTATGCATTGGTTCCAACAGTAAGCGGCCTGTTCTGAAATGGGAGAATAATATGGCCTGGCCTGGCAAGCTTACTCTTACTGATAAAGCAATCTATTTTGAGGCAGTTGGCATACTGGCAGAGAAGAGAGCCATGAGATTGGATCTTACGCATGATGGATTACAGGTAGAGAAGGCAAAGGTTGGGCCTTTAGGGTCTGCACTTTTTGACTCTGCTGTTTCTGTTTCTTCCGGCTCAGAGTTGAATCGGTGGGTGCTGGAATTCATCGACTTAGGAGGCGAGATGAGGAGGGATGTTTGGCATGCATTTATAAATGAAGTCATCGCTTTACATAGGTTCATACGCGAGTATGGACCTGATGATTCTGATGAGTCATTGTTTAATGTATATGGAGCTCGCAAAGGAAAGGATAGAGCAACAACCACTGCAATAAATGGTATTGCTAGACTCCAAGTCCTTCAATATTTGCGGAAGTTGCTTGATGATCCCACCAAGCTTGTTCAGTTCTCATATTTACAGAATGCACCACATGGTGACATTGTCCTCCAAACTTTAGCTGTTAATTATTGGGGAGGTCCACTAGTTACAGGATTTGTAAATACCCGGAATCAGCCAGAAACTCGACCTTCTGATGAAATAGCTGATAGCCGCAACCATGTATTTGATATAGATGGAAGTGTCTACTTGCAGAAGTGGATGAAATCTCCATCTTGGGGGTCTAGTATTTCCACTAGTTTTTGGAAGAACATTTCAGTAAAAGGTTTAATATTAAGTAAGAATCTTGTTGTGGCTGATTTATCACTCATAGAAAGAGCAGCAAAAACAAGCAAACATAAGTACCACATTGTGGAGAAGACTCAAGCCACCATTGATGCTGCAACTCTACAAGGCATACCCAGCAACATTGATCTTTTCAAGGAGCTAGTGTTTCCTTTCACCTTGATTGTCAAAAACTTTGAAAAGCTTAGGCACTGGGAGGAGCCACACTTGACTGTTGCATTTCTTGGACTTACCTTTACAATTATTTATAGAAACCTGCTGTCATATATGTTTCCCGTGATGTTGATGATTTTGGCAGTTGGCATGCTGACAATCAGGGCCCTTAAAGAGCAAGGCCGCCTTGGTCGATCTTTTGGTGAAGTCACAATACGTGACCAGCCACCATCTAATACGATACAAAAGATTATTGCTGTAAAAGATGCCATGCGTGATGTCGAGAATTTTATGCAGCAAGTGAATGTCTCCCTCCTCAAAATACGTTCTATTTTACTTTCTGGCCATCCACAGATAACTACTGAGGTTGCACTGGTGCTGATATCTTCTGCAACCATTCTCCTCATTGTCCCGTTCAAGTACATTTTTTCCTTTCTTCTCTTTGATATGTTCACAAGGGAGCTTGAGTTTCGGAGAGAAATGGTGAAGAAGTTCAGAAATTTTCTCAGAGAGAGGTGGCATACGGTTCCTGCTGTCCCCGTGTCAATTTTACCATTTGAAAATGAAGAATCCAGATCAGAAATTTACTTAAAGGAAATGGAGGATCAATCAAAATCACAAGGAAATCAGAGCAGTGGAAAGTCCAGATAG
Predicted protein sequences of Glyma08g19800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g19800.1 sequence type=predicted peptide gene model=Glyma08g19800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGSKFPMTQLGTSPGYMISPHRDFCVYSKYSRRISSEQKFPFKFVAQSLGHKWKLNDISTSSIQERLNVLMSRTQNFWNEVTFPLAKPGQSRKPDTENDCGFQVMEDIFMIEQTMDRRTPCGVLSLAVVICIEQFSRMNGLTGKKMQKIFEALVPESVYNDARNLVEYCCFRFLSRDGSDIHPSLQDPAFQRLIFITMLAWENPYTNDLSSNSEKASLQNKLVTEEAFVRLAPAISGVVDRPTVHNLFKALAGDQEGISVSSWLNYINEFVKVRQKLISYQIPEFPQLSEERILCIGSNSKRPVLKWENNMAWPGKLTLTDKAIYFEAVGILAEKRAMRLDLTHDGLQVEKAKVGPLGSALFDSAVSVSSGSELNRWVLEFIDLGGEMRRDVWHAFINEVIALHRFIREYGPDDSDESLFNVYGARKGKDRATTTAINGIARLQVLQYLRKLLDDPTKLVQFSYLQNAPHGDIVLQTLAVNYWGGPLVTGFVNTRNQPETRPSDEIADSRNHVFDIDGSVYLQKWMKSPSWGSSISTSFWKNISVKGLILSKNLVVADLSLIERAAKTSKHKYHIVEKTQATIDAATLQGIPSNIDLFKELVFPFTLIVKNFEKLRHWEEPHLTVAFLGLTFTIIYRNLLSYMFPVMLMILAVGMLTIRALKEQGRLGRSFGEVTIRDQPPSNTIQKIIAVKDAMRDVENFMQQVNVSLLKIRSILLSGHPQITTEVALVLISSATILLIVPFKYIFSFLLFDMFTRELEFRREMVKKFRNFLRERWHTVPAVPVSILPFENEESRSEIYLKEMEDQSKSQGNQSSGKSR*