SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G06470 | AT | Annotation by Michelle Graham. TAIR10: GNS1/SUR4 membrane protein family | chr3:1984206-1985042 FORWARD LENGTH=278 | SoyBase | E_val: 1.00E-106 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0046520 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sphingoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG3071 | KOG | Fatty acyl-CoA elongase/Polyunsaturated fatty acid specific elongation enzyme | JGI | ISS | |
| PTHR11157 | Panther | FATTY ACID ACYL TRANSFERASE-RELATED | JGI | ISS | |
| PF01151 | PFAM | GNS1/SUR4 family | JGI | ISS | |
| UniRef100_I1KUK9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KUK9_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q2HTN1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Elongation of fatty acids protein n=1 Tax=Medicago truncatula RepID=Q2HTN1_MEDTR | SoyBase | E_val: 4.00E-116 | ISS |
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Glyma08g19790 not represented in the dataset |
Glyma08g19790 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g185600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g19790.1 sequence type=CDS gene model=Glyma08g19790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTTGATGTCAGCACTGGAATGGTGGCTGGTATACCATCCCAGCATCCAGAAGTTCTCATGGAAGCCTCCTCACACCCCTTTCTCCTCCCCTCTCTTCCTTAGTCTCTCCATCCTCAGCTACCTCTCCCTCACCCTCCTCCTCACCCTCCTCCCTCTCCCACCCTTCCCACACCGCCTCCTGAAGCCCATCACCGCCCTCCACAACCTCCTCCTCCTCCTCCTCTCCCTCCTCATGCTCCTGGGCTGCTCCCTCACCCTCCTCATCCACACCCCTCACCTCCGCTGGGCCGTCTGCTTCCCACCCCACACCAATCCCACCGGGCCCCTCTTCTTCTGGGCCTACATCTTCTACCTCTCCAAAATCCTCGAATTCCTCGACACGCTCTTCATCGTCCTCTCCCGCTCCTTCCGACGCCTCTCCTTCCTCCACGTCTACCACCACGCCACCGTCCTCCTCATGTGCTACCTCTGGCTCCAAACCTCCCAATCCCTCTTCCCCGTCGCGCTCCTCACCAATGCCTCCGTCCACGTCATCATGTACGGTTACTACTTCCTCAGCGCCCTCGGCATCCGCCCCTCCTGGAAGCGCGCCGTCACCGACTGCCAGATCATCCAGTTCGTCTTCAGCTTCGCAATTTCGGGTCTCATGCTCCACTACCACTTCTCCGGATCCGGATGCTCCGGGATTTGGGGCTGGTGCTTCAATGCGGTTTTTAATGCCTCTCTCTTGGCCCTCTTTGTTGATTTTCATCTCAAGAGTTATGCTAAGAAACGCACTCTTAATAAGGACTCATGA
>Glyma08g19790.1 sequence type=predicted peptide gene model=Glyma08g19790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLMSALEWWLVYHPSIQKFSWKPPHTPFSSPLFLSLSILSYLSLTLLLTLLPLPPFPHRLLKPITALHNLLLLLLSLLMLLGCSLTLLIHTPHLRWAVCFPPHTNPTGPLFFWAYIFYLSKILEFLDTLFIVLSRSFRRLSFLHVYHHATVLLMCYLWLQTSQSLFPVALLTNASVHVIMYGYYFLSALGIRPSWKRAVTDCQIIQFVFSFAISGLMLHYHFSGSGCSGIWGWCFNAVFNASLLALFVDFHLKSYAKKRTLNKDS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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