Glyma08g19760 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g19760

Feature Type:	gene_model
Chromosome:	Gm08
Start:	14923804
stop:	14928373
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g19760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G25290	AT	Annotation by Michelle Graham. TAIR10: RHOMBOID-like protein 10 \| chr1:8867157-8868945 FORWARD LENGTH=336	SoyBase	E_val: 1.00E-117	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0031969	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast membrane	SoyBase	N/A	ISS
GO:0004252	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity	SoyBase	N/A	ISS
PTHR22936	Panther	RHOMBOID-RELATED	JGI		ISS
PF01694	PFAM	Rhomboid family	JGI		ISS
UniRef100_G7IR52	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Rhomboid protease gluP n=1 Tax=Medicago truncatula RepID=G7IR52_MEDTR	SoyBase	E_val: 1.00E-174	ISS
UniRef100_I1KUK6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUK6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g19760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g19760

Paralog	Evidence	Comments
Glyma15g05260	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g19760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g185300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g19760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g19760

Limit To All Plant Sequences

>Glyma08g19760.1   sequence type=CDS   gene model=Glyma08g19760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAGTAGGATTGAATGTGCCTCAGCCATTTCTGTCACCAGTTTGCAAGACGGCACCTTACCCACTTGATCTCATCGCCACCGCCGCGTCCCTCCACTTCGGCCACCTTCTCCGCCGCCGCGCGACCCACCATCTCCGCCTTGGGGTTCTTCTTCACTCCTGTTTCAAGAAACTCGCTCCTTTAACTCACATTTTTAGATTGAACGATAAGTGGTGTCAAAGATGCTTTCAACTCAATGGGTTGAACTATCTTCAACTGTCAACCGGTGATTTGACTTCCTCATGGTCAACTAGTTTCTCTTTCTTTAATGGGGGAGGAGATGGAGGCCGCCGCTATGGAAAGGCTGGGATGTCCAACTCCAAGATGTCTGGAAAAGATCCATTTAATGGAAGGAAATGGACAGAAATTCTCCTTGCTGCCAATGTTTTATTTTATATTGCACAACTTGCAACCCAAGGCAAGCTATTATTGTGGGGAGCAAAGATAAATAGTCTAATTGACAAAGGACAACTTTGGAGACTTGCCACGTCTTCCTTTTTGCATGCCAACATCGGACACCTTTTGGTAAATTGTTATTCCTTGAACTCAGTTGGTCCTACTGTGGAGAGCTTCAGTGGCCCTCGGAGATTTCTTGCAGTTTACTTTATCTCTGCAATTGCAAGTTCTGCTACGAGTTATTGGTTCTGCAGAATGCCTGCTGTAGGTGCATCAGGAGCAATTTTTGGACTAGTTGGATCAGTTGCCGTATTTGTATTAAGGCACAAAGACCTTGTGGGAGGTGGTAAAAAAGATTTACAACACATAGCCCAAGTAATTGCCCTCAATATGGTTATTGGGCTATTATCCACTGGGATTGACAACTGGGGACATTTAGGAGGGTTGGTTGGTGGAGTTGCTGCATCATGGTTTATTGGACCGGCATGGAAACATGAATCCACATCAAGTGATGGAAGAAGACTTTTCATTGACACTGCACCAATGTATAAACTCTTCAAGATTAAAAGAGTACCTAAGCAATGGAAATAG

Predicted protein sequences of Glyma08g19760

Limit To All Plant Sequences

>Glyma08g19760.1   sequence type=predicted peptide   gene model=Glyma08g19760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVGLNVPQPFLSPVCKTAPYPLDLIATAASLHFGHLLRRRATHHLRLGVLLHSCFKKLAPLTHIFRLNDKWCQRCFQLNGLNYLQLSTGDLTSSWSTSFSFFNGGGDGGRRYGKAGMSNSKMSGKDPFNGRKWTEILLAANVLFYIAQLATQGKLLLWGAKINSLIDKGQLWRLATSSFLHANIGHLLVNCYSLNSVGPTVESFSGPRRFLAVYFISAIASSATSYWFCRMPAVGASGAIFGLVGSVAVFVLRHKDLVGGGKKDLQHIAQVIALNMVIGLLSTGIDNWGHLGGLVGGVAASWFIGPAWKHESTSSDGRRLFIDTAPMYKLFKIKRVPKQWK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain