Glyma08g19750 - SoyBase

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Report for Sequence Feature Glyma08g19750

Feature Type:	gene_model
Chromosome:	Gm08
Start:	14920284
stop:	14923178
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g19750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G20870	AT	Annotation by Michelle Graham. TAIR10: HSP20-like chaperones superfamily protein \| chr1:7259287-7260775 REVERSE LENGTH=463	SoyBase	E_val: 5.00E-71	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
UniRef100_I1KUK5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUK5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SYQ0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Alpha-crystallin domain of heat shock protein-containing protein n=1 Tax=Arabidopsis thaliana RepID=Q9SYQ0_ARATH	SoyBase	E_val: 3.00E-68	ISS

Expression Patterns of Glyma08g19750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g19750

Paralog	Evidence	Comments
Glyma15g05270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g19750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g185200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g19750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g19750

Limit To All Plant Sequences

>Glyma08g19750.2   sequence type=transcript   gene model=Glyma08g19750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCTCAAGCCCAAGGTACAGATTGTGTAATGCAGAGTGGAGTTATATCAAGTCACAAGTCCCAACTAGAAATGAAGAAGGGGAAAGAAAACAAATATTCGCCACATCCACATTCCTTCAGCGACGGCGCATGCTTCCAGTTCCTCTTCTCACCGTCGTCACTGTGGATTATTCTTCTCTTCTCACTCACTCACACACACACACAACCCTCTTCAAGGTGAATGTGAATCCACACCACTCATGGATTTGAGAGGAAATCTTAATTACAAGAGAAGTTCTCTCACTGTCAAACCGGTGAGTAGTGATAGGAAGTTTCTCATTGACTTCATCGTCACTACTTATTTGGGACCTGATGTCAAGTCTCATAATCCAAGATGTTCTGTTATTCGAAGACTAATCGCTGGATCCCCACCCTATATCTCGAGTGATTTGGGACCTTCGTATGTTAGTGTTTCTTTCTTGGAGAGATTGTATTATTATCTCCTCAGAGATGCTTCCCCTGACCTAGTCTTGGATATCAATATGTTCCATATGTATCTAAAGGGGAAATTAGTTTTGCCCACTTCTGACTTTATTACCCAGGAATATAGTCAGCAGTTCACTAGCTTTTTCCCTTTGGATCTGCATCAACAGATATGGTACCCTGATAGCTTCAGAGTTGTTAAAGGGGTTGTTTTAGTTGACGATCCTTCTACGTCTTGCATCAAAGAGGAGGACTTAAATAGATTCAGGTCTTTAACTGGTGTCAGGACTTTCAAGTTGAATCTAAGTGAATGTCAATGTTTTCAACTTGATTGTCGATCAAGCAAGGAAGGTGGTGATAATTGCATGAACAAAATGCCAGAGACTTTTCCAAATGGGGGATGCCAATCAGAAAAGCTTCAACAAGAGCGCAAGAGGAAGTATATTGATGGTACACCGCTAAAGCCGAAATTTCCCAATGTCCTCCCTACAAAACATAATGCCAAGGTAGAACCTTCCAAGAAAAAGTGCAAATCTGATGGGCCAACATTCATGCCCCTTATCTCTATTCCTGACATTGGTGACTGCAATGGAGATTCTTCTCTTATTTTAAAAGGGACAGCCAGAAGAGGGCCATTTGGTCCATCTGTTGGTGTTGTAGACATTGGTATTAGTAAAGTGGCATATCTATTCCGAGTTTCCTTGCCAGGGGTCAAGAAAGATTTCAGTCAGTTCAGTTGTGATATTGAATCTGATGGGAGGGTTCAGATCAGAGGGGTGTTAACTGGTGGAAGTACTATAACGAAACAATCACGTGTTTTTCAGATGAAAATTAGGCAGTTATGCTCTCCTGGACCATTCACACTTTCATTCAGTCTTCCGGGACCTGTTGATCCAAGACTCTTCGCACCTAACTTCAGGCCTGATGGCATTTTTGAAGGAGTTGTAATCAAGCAGTAGTTAACGGGCAAGAGTTGGGTATCTAGCTTTTGTGAGTAATTCTAGATTTCCCAAAGAGTGAGAGGAACCAAGATATTTTTTCTTTTGTGAGAAGTGAGAAGCCAGATTACTTCAGATGCTAAAATTGACAACGAACTACTAGTTTTGTTCATGAGGAAATAGAATGATCTAGTTAGTTTAGTAAACTAAAGAGTTCGCATGTGTATGAAATGAAAGGAAGCATGGATTTTTCTTTAATTAAAGGGGTGAATGTGTAACTGGGTAGTGAGATTGGAATTGCTGAATATCATCTTATTCATCTGTGACTCTGACCCTCTCGCTGCAAAAGTAGCACAGAAAAAGTCGATGGGAAAAATATCGATTGAATTTAATAAACTTCTATGCCTCCAAATCTTTCACATTTACTCCCAAACTATTGAGAAAAAAATACAGAACATGAATTGATTACAGCACACAAATAGATAGTATATGTTTTTGTCTTATTTGTAAATTAC

Coding sequences of Glyma08g19750

Limit To All Plant Sequences

>Glyma08g19750.1   sequence type=CDS   gene model=Glyma08g19750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTGAGAGGAAATCTTAATTACAAGAGAAGTTCTCTCACTGTCAAACCGGTGAGTAGTGATAGGAAGTTTCTCATTGACTTCATCGTCACTACTTATTTGGGACCTGATGTCAAGTCTCATAATCCAAGATGTTCTGTTATTCGAAGACTAATCGCTGGATCCCCACCCTATATCTCGAGTGATTTGGGACCTTCGTATGTTAGTGTTTCTTTCTTGGAGAGATTGTATTATTATCTCCTCAGAGATGCTTCCCCTGACCTAGTCTTGGATATCAATATGTTCCATATGTATCTAAAGGGGAAATTAGTTTTGCCCACTTCTGACTTTATTACCCAGGAATATAGTCAGCAGTTCACTAGCTTTTTCCCTTTGGATCTGCATCAACAGATATGGTACCCTGATAGCTTCAGAGTTGTTAAAGGGGTTGTTTTAGTTGACGATCCTTCTACGTCTTGCATCAAAGAGGAGGACTTAAATAGATTCAGGTCTTTAACTGGTGTCAGGACTTTCAAGTTGAATCTAAGTGAATGTCAATGTTTTCAACTTGATTGTCGATCAAGCAAGGAAGGTGGTGATAATTGCATGAACAAAATGCCAGAGACTTTTCCAAATGGGGGATGCCAATCAGAAAAGCTTCAACAAGAGCGCAAGAGGAAGTATATTGATGGTACACCGCTAAAGCCGAAATTTCCCAATGTCCTCCCTACAAAACATAATGCCAAGGTAGAACCTTCCAAGAAAAAGTGCAAATCTGATGGGCCAACATTCATGCCCCTTATCTCTATTCCTGACATTGGTGACTGCAATGGAGATTCTTCTCTTATTTTAAAAGGGACAGCCAGAAGAGGGCCATTTGGTCCATCTGTTGGTGTTGTAGACATTGGTATTAGTAAAGTGGCATATCTATTCCGAGTTTCCTTGCCAGGGGTCAAGAAAGATTTCACAGGTCAGTTCAGTTGTGATATTGAATCTGATGGGAGGGTTCAGATCAGAGGGGTGTTAACTGGTGGAAGTACTATAACGAAACAATCACGTGTTTTTCAGATGAAAATTAGGCAGTTATGCTCTCCTGGACCATTCACACTTTCATTCAGTCTTCCGGGACCTGTTGATCCAAGACTCTTCGCACCTAACTTCAGGCCTGATGGCATTTTTGAAGGAGTTGTAATCAAGCAGTAG

>Glyma08g19750.2   sequence type=CDS   gene model=Glyma08g19750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTGAGAGGAAATCTTAATTACAAGAGAAGTTCTCTCACTGTCAAACCGGTGAGTAGTGATAGGAAGTTTCTCATTGACTTCATCGTCACTACTTATTTGGGACCTGATGTCAAGTCTCATAATCCAAGATGTTCTGTTATTCGAAGACTAATCGCTGGATCCCCACCCTATATCTCGAGTGATTTGGGACCTTCGTATGTTAGTGTTTCTTTCTTGGAGAGATTGTATTATTATCTCCTCAGAGATGCTTCCCCTGACCTAGTCTTGGATATCAATATGTTCCATATGTATCTAAAGGGGAAATTAGTTTTGCCCACTTCTGACTTTATTACCCAGGAATATAGTCAGCAGTTCACTAGCTTTTTCCCTTTGGATCTGCATCAACAGATATGGTACCCTGATAGCTTCAGAGTTGTTAAAGGGGTTGTTTTAGTTGACGATCCTTCTACGTCTTGCATCAAAGAGGAGGACTTAAATAGATTCAGGTCTTTAACTGGTGTCAGGACTTTCAAGTTGAATCTAAGTGAATGTCAATGTTTTCAACTTGATTGTCGATCAAGCAAGGAAGGTGGTGATAATTGCATGAACAAAATGCCAGAGACTTTTCCAAATGGGGGATGCCAATCAGAAAAGCTTCAACAAGAGCGCAAGAGGAAGTATATTGATGGTACACCGCTAAAGCCGAAATTTCCCAATGTCCTCCCTACAAAACATAATGCCAAGGTAGAACCTTCCAAGAAAAAGTGCAAATCTGATGGGCCAACATTCATGCCCCTTATCTCTATTCCTGACATTGGTGACTGCAATGGAGATTCTTCTCTTATTTTAAAAGGGACAGCCAGAAGAGGGCCATTTGGTCCATCTGTTGGTGTTGTAGACATTGGTATTAGTAAAGTGGCATATCTATTCCGAGTTTCCTTGCCAGGGGTCAAGAAAGATTTCAGTCAGTTCAGTTGTGATATTGAATCTGATGGGAGGGTTCAGATCAGAGGGGTGTTAACTGGTGGAAGTACTATAACGAAACAATCACGTGTTTTTCAGATGAAAATTAGGCAGTTATGCTCTCCTGGACCATTCACACTTTCATTCAGTCTTCCGGGACCTGTTGATCCAAGACTCTTCGCACCTAACTTCAGGCCTGATGGCATTTTTGAAGGAGTTGTAATCAAGCAGTAG

Predicted protein sequences of Glyma08g19750

Limit To All Plant Sequences

>Glyma08g19750.1   sequence type=predicted peptide   gene model=Glyma08g19750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLRGNLNYKRSSLTVKPVSSDRKFLIDFIVTTYLGPDVKSHNPRCSVIRRLIAGSPPYISSDLGPSYVSVSFLERLYYYLLRDASPDLVLDINMFHMYLKGKLVLPTSDFITQEYSQQFTSFFPLDLHQQIWYPDSFRVVKGVVLVDDPSTSCIKEEDLNRFRSLTGVRTFKLNLSECQCFQLDCRSSKEGGDNCMNKMPETFPNGGCQSEKLQQERKRKYIDGTPLKPKFPNVLPTKHNAKVEPSKKKCKSDGPTFMPLISIPDIGDCNGDSSLILKGTARRGPFGPSVGVVDIGISKVAYLFRVSLPGVKKDFTGQFSCDIESDGRVQIRGVLTGGSTITKQSRVFQMKIRQLCSPGPFTLSFSLPGPVDPRLFAPNFRPDGIFEGVVIKQ*

>Glyma08g19750.2   sequence type=predicted peptide   gene model=Glyma08g19750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLRGNLNYKRSSLTVKPVSSDRKFLIDFIVTTYLGPDVKSHNPRCSVIRRLIAGSPPYISSDLGPSYVSVSFLERLYYYLLRDASPDLVLDINMFHMYLKGKLVLPTSDFITQEYSQQFTSFFPLDLHQQIWYPDSFRVVKGVVLVDDPSTSCIKEEDLNRFRSLTGVRTFKLNLSECQCFQLDCRSSKEGGDNCMNKMPETFPNGGCQSEKLQQERKRKYIDGTPLKPKFPNVLPTKHNAKVEPSKKKCKSDGPTFMPLISIPDIGDCNGDSSLILKGTARRGPFGPSVGVVDIGISKVAYLFRVSLPGVKKDFSQFSCDIESDGRVQIRGVLTGGSTITKQSRVFQMKIRQLCSPGPFTLSFSLPGPVDPRLFAPNFRPDGIFEGVVIKQ*

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