Glyma08g19730 - SoyBase

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Report for Sequence Feature Glyma08g19730

Feature Type:	gene_model
Chromosome:	Gm08
Start:	14903921
stop:	14907343
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g19730

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G26070	AT	Annotation by Michelle Graham. TAIR10: Plastid-lipid associated protein PAP / fibrillin family protein \| chr3:9526904-9528199 FORWARD LENGTH=242	SoyBase	E_val: 1.00E-80	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0010287	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule	SoyBase	N/A	ISS
GO:0005198	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural molecule activity	SoyBase	N/A	ISS
PF04755	PFAM	PAP fibrillin	JGI		ISS
UniRef100_A2Q498	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: PAP fibrillin n=1 Tax=Medicago truncatula RepID=A2Q498_MEDTR	SoyBase	E_val: 5.00E-136	ISS
UniRef100_I1KUK3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KUK3_SOYBN	SoyBase	E_val: 5.00E-157	ISS

Expression Patterns of Glyma08g19730

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g19730

Paralog	Evidence	Comments
Glyma15g05290	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g19730 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g185000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g19730

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g19730

Limit To All Plant Sequences

>Glyma08g19730.3   sequence type=transcript   gene model=Glyma08g19730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCACTTTACAACCAATTATAATGGTTGGCGGTGCATTAGCATAACATAACCCATCTCTCATGGCTCTTTCCGTTCCCACTCCCACTGCTACTCTGCCATTCAAATATGCAATTGATTCCCACCATTCAAAGCCAAATTCTCTATTCTCATCCTCACCACAAAAACTGAACACAACCCACCTCATATTACAAGTAGCTGATTCTGGCAAGTGGAGCAACATGGTTTCATTTTTCCCAGGTTTTATAACCGAAGGTAGAGATGTTCAGAGCCTCAAGGTGGATCTCTATGAAGCAATTGCACCACTTGACCGAGGTGCCGAGGCTACTCCTGAGGACCAACAACGTGTGGACCAGATTGCTCGTAAACTTGAGGCTGTGAATCCTGTTAAGGAGCCTCTCAAGTCTGATTTGCTCAATGGGAAATGGGAGCTTTTCTATACAACATCTCAATCAATTCTGCAAACACAGAGACCGAAACTTTTGAGGCCAAATGGAAAGATCTATCAGGCAATTAATGTGGATACCTTAAGAGCTCAAAATATAGAAACTTGGCCCTTCTACAACCAGGCTACTGCCAATTTAGTGCCTCTTAACTCAAGAAGGGTGGCTGTCAAGTTTGACTTCTTCAAGATAGCTAATCTGATACCTATTAAATCAGCTGGGAGTGGTCGAGGTCAGTTGGAAATTACTTATTTGAATGAAGATTTACGAATATCAAGAGGAAATAGAGGTAATTTGTTCATCTTGAAAATGGTGGATCCATCCTATAGAGTCCCTCTTTGACGTGGATTCTCCAAGAATCGGTAGTGGTGGCTTCAATTTTCACTTTTTGGCATGAATTTAATGGTTCAGTTTGTCTGTCTAAAATTTCCGCCCGATTATGCTTTCTTTTCTGTTGTACCATGTATATTTTTTTTCAGTCACAATCATTCACATATAAAACAAAATATATAGGGAATCTGCAGAAAAGAGACACTAATTAATCACACCAGTATTCTAAGCTACTATTAAACAACATAGAATTGAATCAATTAGATAGTAAACTATTGATTCTAAGCCTTCTTTGCCAATGAATCAACATAAATTAATTAACACAACTTATGTAATAAACTAAACTAAATTTCTA

Coding sequences of Glyma08g19730

Limit To All Plant Sequences

>Glyma08g19730.2   sequence type=CDS   gene model=Glyma08g19730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTTTCCGTTCCCACTCCCACTGCTACTCTGCCATTCAAATATGCAATTGATTCCCACCATTCAAAGCCAAATTCTCTATTCTCATCCTCACCACAAAAACTGAACACAACCCACCTCATATTACAAGTAGCTGATTCTGGCAAGTGGAGCAACATGGTTTCATTTTTCCCAGGTTTTATAACCGAAGGTAGAGATGTTCAGAGCCTCAAGGTGGATCTCTATGAAGCAATTGCACCACTTGACCGAGGTGCCGAGGCTACTCCTGAGGACCAACAACGTGTGGACCAGATTGCTCGTAAACTTGAGGCTGTGAATCCTGTTAAGGAGCCTCTCAAGTCTGATTTGCTCAATGGGAAATGGGAGCTTTTCTATACAACATCTCAATCAATTCTGCAAACACAGAGACCGAAACTTTTGAGGCCAAATGGAAAGATCTATCAGGCAATTAATGTGGATACCTTAAGAGCTCAAAATATAGAAACTTGGCCCTTCTACAACCAGGCTACTGCCAATTTAGTGCCTCTTAACTCAAGAAGGGTGGCTGTCAAGTTTGACTTCTTCAAGATAGCTAATCTGATACCTATTAAATCAGCTGGGAGTGGTCGAGGTCAGTTGGAAATTACTTATTTGAATGAAGATTTACGGTAA

>Glyma08g19730.3   sequence type=CDS   gene model=Glyma08g19730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTTTCCGTTCCCACTCCCACTGCTACTCTGCCATTCAAATATGCAATTGATTCCCACCATTCAAAGCCAAATTCTCTATTCTCATCCTCACCACAAAAACTGAACACAACCCACCTCATATTACAAGTAGCTGATTCTGGCAAGTGGAGCAACATGGTTTCATTTTTCCCAGGTTTTATAACCGAAGGTAGAGATGTTCAGAGCCTCAAGGTGGATCTCTATGAAGCAATTGCACCACTTGACCGAGGTGCCGAGGCTACTCCTGAGGACCAACAACGTGTGGACCAGATTGCTCGTAAACTTGAGGCTGTGAATCCTGTTAAGGAGCCTCTCAAGTCTGATTTGCTCAATGGGAAATGGGAGCTTTTCTATACAACATCTCAATCAATTCTGCAAACACAGAGACCGAAACTTTTGAGGCCAAATGGAAAGATCTATCAGGCAATTAATGTGGATACCTTAAGAGCTCAAAATATAGAAACTTGGCCCTTCTACAACCAGGCTACTGCCAATTTAGTGCCTCTTAACTCAAGAAGGGTGGCTGTCAAGTTTGACTTCTTCAAGATAGCTAATCTGATACCTATTAAATCAGCTGGGAGTGGTCGAGGTCAGTTGGAAATTACTTATTTGAATGAAGATTTACGAATATCAAGAGGAAATAGAGGTAATTTGTTCATCTTGAAAATGGTGGATCCATCCTATAGAGTCCCTCTTTGA

Predicted protein sequences of Glyma08g19730

Limit To All Plant Sequences

>Glyma08g19730.2   sequence type=predicted peptide   gene model=Glyma08g19730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSVPTPTATLPFKYAIDSHHSKPNSLFSSSPQKLNTTHLILQVADSGKWSNMVSFFPGFITEGRDVQSLKVDLYEAIAPLDRGAEATPEDQQRVDQIARKLEAVNPVKEPLKSDLLNGKWELFYTTSQSILQTQRPKLLRPNGKIYQAINVDTLRAQNIETWPFYNQATANLVPLNSRRVAVKFDFFKIANLIPIKSAGSGRGQLEITYLNEDLR*

>Glyma08g19730.3   sequence type=predicted peptide   gene model=Glyma08g19730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSVPTPTATLPFKYAIDSHHSKPNSLFSSSPQKLNTTHLILQVADSGKWSNMVSFFPGFITEGRDVQSLKVDLYEAIAPLDRGAEATPEDQQRVDQIARKLEAVNPVKEPLKSDLLNGKWELFYTTSQSILQTQRPKLLRPNGKIYQAINVDTLRAQNIETWPFYNQATANLVPLNSRRVAVKFDFFKIANLIPIKSAGSGRGQLEITYLNEDLRISRGNRGNLFILKMVDPSYRVPL*

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