Glyma08g19670 - SoyBase

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Report for Sequence Feature Glyma08g19670

Feature Type:	gene_model
Chromosome:	Gm08
Start:	14858695
stop:	14862633
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g19670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G01070	AT	Annotation by Michelle Graham. TAIR10: Lung seven transmembrane receptor family protein \| chr2:75596-77625 FORWARD LENGTH=496	SoyBase	E_val: 0	ISS
GO:0006084	GO-bp	Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0016132	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2568	KOG	Predicted membrane protein	JGI		ISS
PTHR21229	Panther	LUNG SEVEN TRANSMEMBRANE RECEPTOR	JGI		ISS
PTHR21229:SF1	Panther	PTM1	JGI		ISS
PF06814	PFAM	Lung seven transmembrane receptor	JGI		ISS
UniRef100_A2Q492	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lung seven transmembrane receptor n=1 Tax=Medicago truncatula RepID=A2Q492_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KUJ7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUJ7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g19670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g19670

Paralog	Evidence	Comments
Glyma15g05370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g19670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g184400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g19670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g19670

Limit To All Plant Sequences

>Glyma08g19670.1   sequence type=CDS   gene model=Glyma08g19670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCAGCATTTGCGAGAACGAGAACAAGATCCATGTTCTTCTTAGCTTCACTCCTCTTCTACATATTCGCAGTCACCACCACCACCACCTTCGCATCCATCCACATCTACGACCATGAACCTTTCATAGAACTCGGCAATTCCTACCTCCTCGCCGGCGGCAGCGAAGGCATCGTCGCTTCCCAAGCCAATTCCATCCACGACGATGGCCGTTCCTACATTCGATTCGAGAATATAACCTTCAGGAGAACCAAAGCTTCAGCTAAGGCACGCGGTTCTGTGCCATTACACATCATAATTTTTGAGGCTGCTGATCGTAATGATATAGGTGGTTCTGCTTATGGTGGACAACGGGAAATCTGTTGCAGTCCTGATTTAGCTAAGATGGGAGTTTGTAAGCAAGGAGAGATTATTAGGAGACCTTCTGCAACGGACATTAATTGGCCAGTCATTTTAGACGTACAATTCAAAGGCAGATCTAAAACTGCAAGTCTAGATTCTCAGAAAGTTTCTATCACAAAGACTGGAATGTATAATTTGTTTTTTGTAGCTTGTGAACCCAAGCTCAAGGGCATAGTAATGAGTGGGAAGACAGTATGGAAAAACCCTGATGGGTATTTACCTGGTAGGATGGCCCCATTAAAGAAGTTCTATGTATTTATGACACTGGCTTATGTTTGCCTTAGCATCATTTGGTTTTTTCAGTATGTGAGATTTTGGGATGATGTACTGCAACTTCAGCACTGTATCACAGCTGTCATTGCTCTTGGATTGTTTGAGATGATTCTCTGGTATTTTGAGTATGTGAATTTCAACAATACTGGAATGAGACCTATTGTGCTCACAACATGGGTTGTCACTGTTGGGGCTATAAGAAAATCAATATCACGACTTCTCATTCTCTCTGTTTCAATGGGTTATGGTGTTGTGCGACCCACTCTGGGTGGTCTTACATCAAAGGTTCTTTTACTTGGAATAACTTACTTTCTAGCATCCGAGTTACTGAATATTACTGAATATGTGGGGACCATCAATGATGTGTCAGGAAGGGCAAGGCTCCTTCTAGTTCTTCCTGATGCTTTCTTAGATGCATTTTTGATATTATGGATTTTTACATCTCTTTCAAGAACACTGGAGCAGTTACAGGCAAAACGAAGTTCTGTTAAGTTGGATATATATAGGAAGTTCTCAAATGCATTAGCAGTAACGGTGATCTCCTCAGTTGCTTGGATAGGATATGAGGTATACTTCAAAGCTACAGATCCTTTCAATGAGCGCTGGCAGAGTGCTTGGATCATCACTGCATTCTGGGACATTCTAGCATTTGCATTACTCTGTGTTATATGTTATCTCTGGGCCCCATCCCAAAGCTCTCAAAGGTATGCGTATTCGGAGGAAGTGGGAGAAGATTCTGATGACGAAGAAGCTCAATCTCTCACCAAGGGAAAGCAGGAAGGTCAAGGTGAACTAAGTTTAGTTCGGCAAGAGAAGAATGGTGGAACTGATGTATCCTTTGATCAAGAAGACGAGTCAGAAGAGGAGGATAAAAGGGAATGA

Predicted protein sequences of Glyma08g19670

Limit To All Plant Sequences

>Glyma08g19670.1   sequence type=predicted peptide   gene model=Glyma08g19670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSAFARTRTRSMFFLASLLFYIFAVTTTTTFASIHIYDHEPFIELGNSYLLAGGSEGIVASQANSIHDDGRSYIRFENITFRRTKASAKARGSVPLHIIIFEAADRNDIGGSAYGGQREICCSPDLAKMGVCKQGEIIRRPSATDINWPVILDVQFKGRSKTASLDSQKVSITKTGMYNLFFVACEPKLKGIVMSGKTVWKNPDGYLPGRMAPLKKFYVFMTLAYVCLSIIWFFQYVRFWDDVLQLQHCITAVIALGLFEMILWYFEYVNFNNTGMRPIVLTTWVVTVGAIRKSISRLLILSVSMGYGVVRPTLGGLTSKVLLLGITYFLASELLNITEYVGTINDVSGRARLLLVLPDAFLDAFLILWIFTSLSRTLEQLQAKRSSVKLDIYRKFSNALAVTVISSVAWIGYEVYFKATDPFNERWQSAWIITAFWDILAFALLCVICYLWAPSQSSQRYAYSEEVGEDSDDEEAQSLTKGKQEGQGELSLVRQEKNGGTDVSFDQEDESEEEDKRE*

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